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BaseInfo

ncRNA ID	novel_gma_miR4497
Species	Glycine max
Class	miRNA
Genome position	Chr7:19764789-19764997 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2045234
Length	24
Mature sequence(if miRNA)	1 - GAACAACAAAUGGUGGGUGUUUGU - 24
Stem-loop(if miRNA)	--    A                    A  A AAAGCGAGGACUAGCGGAAGUGUGGUUCCAGGAUCAGAACUGGCUCUGAUACCAUGUUAGAUUUCAUCUUAAA   GAAC ACAAAUGGUGGGUGUUUGUC CC C                                                                         A   |||| |||||||||||||||||||| || |   CUUG UGUUUACCACCCACGAGCAG GU C                                                                         C CA    G                    C  - GCCUUCGCUUCCGCUCCAGGAUCCCAGUUUCGGACGAGACUAUGGUACAAUCUAAAGUAGAAUUUCGGUUAAC
Stem-loop sequence	GAACAACAAAUGGUGGGUGUUUGUCACCACAAAGCGAGGACUAGCGGAAGUGUGGUUCCAGGAUCAGAACUGGCUCUGAUACCAUGUUAGAUUUCAUCUUAAAACCAAUUGGCUUUAAGAUGAAAUCUAACAUGGUAUCAGAGCAGGCUUUGACCCUAGGACCUCGCCUUCGCUUCCGCUGCGACGAGCACCCACCAUUUGUGGUUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763615.1	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   ||=|==|||||||||||||*|||| targets:53   ACGAGUACCCACCAUUUGUGGUUC   76 Target Full Sequence	2.5	PREDICTED: Glycine max putative phospholipid:diacylglycerol acyltransferase 2 (LOC106794309), mRNA	putative phospholipid:diacylglycerol acyltransferase 2(LOC106794309)	coding protein	psRNATarget
XM_014764144.1	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   ||=|==|||||||||||||*|||| targets:3565   ACGAGUACCCACCAUUUGUGGUUC   3588 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like (LOC100797438), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like(LOC100797438)	coding protein	psRNATarget
XM_014764142.1	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   ||=|==|||||||||||||*|||| targets:3565   ACGAGUACCCACCAUUUGUGGUUC   3588 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like (LOC100797438), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like(LOC100797438)	coding protein	psRNATarget
XM_014764143.1	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   ||=|==|||||||||||||*|||| targets:3565   ACGAGUACCCACCAUUUGUGGUUC   3588 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like (LOC100797438), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like(LOC100797438)	coding protein	psRNATarget
XM_006584936.2	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   *||=|||||*||||*||||||||| targets:393   CCAGACACCAACCACUUGUUGUUC   416 Target Full Sequence	2.5	PREDICTED: Glycine max alpha N-terminal protein methyltransferase 1 (LOC100809415), mRNA	alpha N-terminal protein methyltransferase 1(LOC100809415)	coding protein	psRNATarget
NM_001254655.2	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   |*||=|*==||||||||||||||| targets:17   AAAAGCCUUCACCAUUUGUUGUUC   40 Target Full Sequence	3.0	Glycine max UPF0308 protein At2g37240, chloroplastic-like (LOC100795126), mRNA	UPF0308 protein At2g37240, chloroplastic-like(LOC100795126)	coding protein	psRNATarget
BT095805.1	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   |*||=|*==||||||||||||||| targets:19   AAAAGCCUUCACCAUUUGUUGUUC   42 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-19L24 unknown mRNA	NA	coding protein	psRNATarget
XM_003551311.3	ncRNA:24   UGUUUGUGGGUGGUAAACAACAAG   1   *=**==|||=|||||||||||||* targets:1436   UUCUGUACCUACCAUUUGUUGUUG   1459 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100813747 (LOC100813747), mRNA	uncharacterized LOC100813747(LOC100813747)	coding protein	psRNATarget