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BaseInfo

ncRNA ID novel_gma_miR4478
Species Glycine max
Class miRNA
Genome position Chr18:55385929-55385988 [+]
Reference genome Glycine_max_v2.0
Source SRR1294487
Length 20
Mature sequence(if miRNA) 41 - AAAAUGGGCUGGUGCUUGGU - 60
Stem-loop(if miRNA) --  U      --    GC     G   AAC
  CA GCACCA  UCAU  UUUUU ACC   A
  || ||||||  ||||  ||||| |||   A
  GU CGUGGU  GGUA  AAGGA UGG   C
UG  U      CG    -A     G   CCA
Stem-loop sequence CAUGCACCAUCAUGCUUUUUGACCAACAACACCGGUGAGGAAAAUGGGCUGGUGCUUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006603423.1
ncRNA:20   UGGUUCGUGGUCGGGUAAAA   1
  =||||||||=||||||||||
targets:1185   GCCAAGCACUAGCCCAUUUU   1204

1.5 PREDICTED: Glycine max uncharacterized LOC102659954 (LOC102659954), mRNA uncharacterized LOC102659954(LOC102659954) coding protein psRNATarget
XM_014761665.1
ncRNA:20   UGGUUCGUGGUCGGGUAAAA   1
  *||*||||||||=|||||||
targets:24   CCCCAGCACCAGUCCAUUUU   43

2.5 PREDICTED: Glycine max RNA-directed DNA polymerase homolog (LOC106794399), mRNA RNA-directed DNA polymerase homolog(LOC106794399) coding protein psRNATarget