ncRNA ID | ath-miR167c-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr3:1306622-1306781 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 9 - UAGGUCAUGCUGGUAGUUUCACC - 31 |
Stem-loop(if miRNA) |
C  G      -UU                  U    UC       ---     ----       UAGUUAAUA     UUUAUAUAU  CA UAGCAG   AAGCUGCCAGCAUGAUCU GUCU  CUCUCUU   AGGUU    UCAUAUA         AAUAU         U  || ||||||   |||||||||||||||||| ||||  |||||||   |||||    |||||||         |||||         U  GU AUCGUC   UUUGAUGGUCGUACUGGA CAGA  GAGAGAG   UUCGA    AGUAUAU         AGAAC         C -  A      CAC                  U    GA       AGA     UACU       --------U     AUUCUUGUU |
Stem-loop sequence | CCAGUAGCAGUUAAGCUGCCAGCAUGAUCUUGUCUUCCUCUCUUAGGUUUCAUAUAUAGUUAAUAAAUAUUUUAUAUAUUUCUUGUUCUUACAAGAUUAUAUGAUCAUAGCUUAGAGAGAGAGAGAGACUAGGUCAUGCUGGUAGUUUCACCUGCUAAUG |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |