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BaseInfo

ncRNA ID ath-miR167c-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:1306622-1306781 [-]
Reference genome TAIR10
Source miRBase
Length 23
Mature sequence(if miRNA) 9 - UAGGUCAUGCUGGUAGUUUCACC - 31
Stem-loop(if miRNA) C  G      -UU                  U    UC       ---     ----       UAGUUAAUA     UUUAUAUAU
 CA UAGCAG   AAGCUGCCAGCAUGAUCU GUCU  CUCUCUU   AGGUU    UCAUAUA         AAUAU         U
 || ||||||   |||||||||||||||||| ||||  |||||||   |||||    |||||||         |||||         U
 GU AUCGUC   UUUGAUGGUCGUACUGGA CAGA  GAGAGAG   UUCGA    AGUAUAU         AGAAC         C
-  A      CAC                  U    GA       AGA     UACU       --------U     AUUCUUGUU
Stem-loop sequence CCAGUAGCAGUUAAGCUGCCAGCAUGAUCUUGUCUUCCUCUCUUAGGUUUCAUAUAUAGUUAAUAAAUAUUUUAUAUAUUUCUUGUUCUUACAAGAUUAUAUGAUCAUAGCUUAGAGAGAGAGAGAGACUAGGUCAUGCUGGUAGUUUCACCUGCUAAUG

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
3 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).