Search result

BaseInfo

ncRNA ID	novel_gma_miR4442
Species	Glycine max
Class	miRNA
Genome position	Chr2:47114375-47114543 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2045232
Length	24
Mature sequence(if miRNA)	146 - CAAAUUACAGGGACUAAAAGAGAA - 169
Stem-loop(if miRNA)	--                     U       G                     -   GAUUCUUA              A     U   CUCUUUUAGUCCUUGUAGUUU GAAAGUG UCUUUUUAGUCCCUAUAGUUU CAU        CUUUUUUAGUUCUU UAGUU U   ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||        |||||||||||||| |||||   GAGAAAAUCAGGGACAUUAAA CUUUCAC AGAAAAAUCAGGGAUAUUAAA GUA        GAGAAAAUUAGGGA AUUAA C AA                     -       A                     U   -AAAUUAA              C     A
Stem-loop sequence	CUCUUUUAGUCCUUGUAGUUUUGAAAGUGGUCUUUUUAGUCCCUAUAGUUUCAUGAUUCUUACUUUUUUAGUUCUUAUAGUUUUCAAAUUACAGGGAUUAAAAGAGAAUUAAAAUGUAAAUUAUAGGGACUAAAAAGAACACUUUCAAAUUACAGGGACUAAAAGAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014778064.1	ncRNA:24   AAGAGAAAA-UCAGGGACAUUAAAC   1   |||-|||||-|*||||||||||||| targets:4287   UUC-CUUUUCAUUCCCUGUAAUUUG   4310 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100803516 (LOC100803516), transcript variant X1, mRNA	uncharacterized LOC100803516(LOC100803516)	coding protein	psRNATarget
XM_014778065.1	ncRNA:24   AAGAGAAAA-UCAGGGACAUUAAAC   1   |||-|||||-|*||||||||||||| targets:1197   UUC-CUUUUCAUUCCCUGUAAUUUG   1220 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100803516 (LOC100803516), transcript variant X2, mRNA	uncharacterized LOC100803516(LOC100803516)	coding protein	psRNATarget
XM_014778068.1	ncRNA:24   AAGAGAAAA-UCAGGGACAUUAAAC   1   |||-|||||-|*||||||||||||| targets:1048   UUC-CUUUUCAUUCCCUGUAAUUUG   1071 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100803516 (LOC100803516), transcript variant X5, mRNA	uncharacterized LOC100803516(LOC100803516)	coding protein	psRNATarget
XM_014778067.1	ncRNA:24   AAGAGAAAA-UCAGGGACAUUAAAC   1   |||-|||||-|*||||||||||||| targets:866   UUC-CUUUUCAUUCCCUGUAAUUUG   889 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100803516 (LOC100803516), transcript variant X4, mRNA	uncharacterized LOC100803516(LOC100803516)	coding protein	psRNATarget