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BaseInfo

ncRNA ID novel_gma_miR4427
Species Glycine max
Class miRNA
Genome position Chr11:6711109-6711238 [-]
Reference genome Glycine_max_v2.0
Source SRR2045231
Length 24
Mature sequence(if miRNA) 1 - AAACAAACACAUUUUGAAAGGACU - 24
Stem-loop(if miRNA) --     A            A          CA  -C           U      ---------    UU
  UCCUU CAAAAUGUGUUU UUUUGUUUUU  UC  UUAAAGUGCUU AGAUAA         CGCU  G
  ||||| |||||||||||| ||||||||||  ||  ||||||||||| ||||||         ||||
  AGGAA GUUUUACACAAA AAAAUAAAAA  AG  AAUUUCACGAA UCUAUU         GUGA  A
UC     A            C          AC  AA           C      ACAAAAAAA    UA
Stem-loop sequence UCCUUACAAAAUGUGUUUAUUUUGUUUUUCAUCCUUAAAGUGCUUUAGAUAACGCUUUGAAUAGUGAAAAAAACAUUAUCUCAAGCACUUUAAAAGACAAAAAAUAAAACAAACACAUUUUGAAAGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014774174.1
ncRNA:24   UCAGGAAAGUUUUACACAAACAAA   1
  *|||-||||=||||*|||||||||
targets:4573   UGUC-UUUCGAAAUUUGUUUGUUU   4595

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X8, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget
XM_006597742.2
ncRNA:24   UCAGGAAAGUUUUACACAAACAAA   1
  **||*||*=|=|||||||||||||
targets:3581   UUUCAUUAUAGAAUGUGUUUGUUU   3604

3.0 PREDICTED: Glycine max uncharacterized LOC102660146 (LOC102660146), mRNA uncharacterized LOC102660146(LOC102660146) coding protein psRNATarget