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BaseInfo

ncRNA ID novel_gma_miR4407
Species Glycine max
Class miRNA
Genome position Chr7:44402656-44402850 [+]
Reference genome Glycine_max_v2.0
Source SRR2045231;SRR2045233;SRR1295523
Length 22
Mature sequence(if miRNA) 174 - UUCAAAUCUGGACUUGGGGACC - 195
Stem-loop(if miRNA) --       AC   A        G                                   C  A            -     ----       GCCCA    U
  UCCUCAA  CCA AUUUGAAC UUGACUGUCACAAAGAAACGUUGACUGUCAUGUGU AC UUCUGAUUGGAC AUGAA    AAGGUGU     AGAG C
  |||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    |||||||     ||||
  AGGGGUU  GGU UAAACUUG AACUGACAGUGUUUCUUUGCAACUGACAGUGCACA UG AAGACUAACCUG UACUU    UUUUACA     UCUC A
CC       CA   C        A                                   A  C            C     GUUU       ----A    G
Stem-loop sequence UCCUCAAACCCAAAUUUGAACGUUGACUGUCACAAAGAAACGUUGACUGUCAUGUGUCACAUUCUGAUUGGACAUGAAAAGGUGUGCCCAAGAGUCAGCUCUAACAUUUUUUUGUUCAUCGUCCAAUCAGAACGUAACACGUGACAGUCAACGUUUCUUUGUGACAGUCAAAGUUCAAAUCUGGACUUGGGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT092115.1
ncRNA:22   CCAGGGGUUCAGGUCUAAACUU   1
  ***=||||||||||*|||||||
targets:402   ACCUCCCAAGUCCAAAUUUGAA   423

2.5 Soybean clone JCVI-FLGm-10I17 unknown mRNA NA coding protein psRNATarget
X05092.1
ncRNA:22   CCAGGGGUUCAGGUCUAAACUU   1
  ***=||||||||||*|||||||
targets:399   ACCUCCCAAGUCCAAAUUUGAA   420

2.5 Soybean mRNA for nodulin-26b NA coding protein psRNATarget
NM_001248956.2
ncRNA:22   CCAGGGGUUCAGGUCUAAACUU   1
  ***=||||||||||*|||||||
targets:467   ACCUCCCAAGUCCAAAUUUGAA   488

2.5 Glycine max nodulin-26b (AA 1-213) (LOC547905), mRNA nodulin-26b (AA 1-213)(LOC547905) coding protein psRNATarget