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BaseInfo

ncRNA ID	ath-miR167c-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:1306622-1306781 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	129 - UAAGCUGCCAGCAUGAUCUUG - 149
Stem-loop(if miRNA)	C  G      -UU                  U    UC       ---     ----       UAGUUAAUA     UUUAUAUAU  CA UAGCAG   AAGCUGCCAGCAUGAUCU GUCU  CUCUCUU   AGGUU    UCAUAUA         AAUAU         U  || ||||||   |||||||||||||||||| ||||  |||||||   |||||    |||||||         |||||         U  GU AUCGUC   UUUGAUGGUCGUACUGGA CAGA  GAGAGAG   UUCGA    AGUAUAU         AGAAC         C -  A      CAC                  U    GA       AGA     UACU       --------U     AUUCUUGUU
Stem-loop sequence	CCAGUAGCAGUUAAGCUGCCAGCAUGAUCUUGUCUUCCUCUCUUAGGUUUCAUAUAUAGUUAAUAAAUAUUUUAUAUAUUUCUUGUUCUUACAAGAUUAUAUGAUCAUAGCUUAGAGAGAGAGAGAGACUAGGUCAUGCUGGUAGUUUCACCUGCUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY669788.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   ==||||||*|||||||||||= targets:2519   UGAGAUCAGGCUGGCAGCUUG   2539 Target Full Sequence	2.5	Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001036038.2	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   ==||||||*|||||||||||= targets:3235   UGAGAUCAGGCUGGCAGCUUG   3255 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 6 (ARF6), mRNA	auxin response factor 6(ARF6)	coding protein	psRNATarget
AF013467.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   ==||||||*|||||||||||= targets:3265   UGAGAUCAGGCUGGCAGCUUG   3285 Target Full Sequence	2.5	Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds	NA	coding protein	psRNATarget
NM_102771.4	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   ==||||||*|||||||||||= targets:3340   UGAGAUCAGGCUGGCAGCUUG   3360 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 6 (ARF6), mRNA	auxin response factor 6(ARF6)	coding protein	psRNATarget
NM_001332891.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   ==||||||*|||||||||||= targets:3471   UGAGAUCAGGCUGGCAGCUUG   3491 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 6 (ARF6), mRNA	auxin response factor 6(ARF6)	coding protein	psRNATarget
AY669790.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   =*||||||*|||||||||||= targets:2246   UUAGAUCAGGCUGGCAGCUUG   2266 Target Full Sequence	2.5	Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete cds	NA	coding protein	psRNATarget
AF042196.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   =*||||||*|||||||||||= targets:2369   UUAGAUCAGGCUGGCAGCUUG   2389 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001085203.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   =*||||||*|||||||||||= targets:2369   UUAGAUCAGGCUGGCAGCUUG   2389 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 8 (ARF8), mRNA	auxin response factor 8(ARF8)	coding protein	psRNATarget
NM_001344162.1	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   =*||||||*|||||||||||= targets:2897   UUAGAUCAGGCUGGCAGCUUG   2917 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 8 (ARF8), mRNA	auxin response factor 8(ARF8)	coding protein	psRNATarget
NM_123060.3	ncRNA:21   GUUCUAGUACGACCGUCGAAU   1   =*||||||*|||||||||||= targets:2944   UUAGAUCAGGCUGGCAGCUUG   2964 Target Full Sequence	2.5	Arabidopsis thaliana auxin response factor 8 (ARF8), mRNA	auxin response factor 8(ARF8)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
3	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).