Search result

BaseInfo

ncRNA ID	novel_gma_miR4343
Species	Glycine max
Class	miRNA
Genome position	Chr1:42563976-42564114 [+]
Reference genome	Glycine_max_v2.0
Source	SRR2045231
Length	21
Mature sequence(if miRNA)	1 - CAAUCCGUGCCUCUUCCUCCU - 21
Stem-loop(if miRNA)	--     C    C                   C          G   -C  C    C         C      CAAUC GUGC UCUUCCUCCUCUACCAGCU AAUAUCUUUC UUU  AC UUUG UUUUGUAAA UACA   ||||| |||| ||||||||||||||||||| |||||||||| |||  || |||| ||||||||| |||U   GUUAG CACG AGAAGGAGGAGAUGGUCGA UUAUAGAAAG AAA  UG AAAC AAAACAUUU AUGU UG     A    A                   A          G   UU  A    -         A
Stem-loop sequence	CAAUCCGUGCCUCUUCCUCCUCUACCAGCUCAAUAUCUUUCGUUUCACCUUUGCUUUUGUAAACUACAUUGUAAUUUACAAAACAAAAGUUUAAAGGAAAGAUAUUAAGCUGGUAGAGGAGGAAGAAGCACAGAUUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014779469.1	ncRNA:21   UCCUCCUUCUCCGUGCCUAAC   1   |||||||||||*||||||||| targets:815   AGGAGGAAGAGCCACGGAUUG   835 Target Full Sequence	1.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_006586135.2	ncRNA:21   UCCUCCUUCUCCGUGCCUAAC   1   |||||||||||*||||||||| targets:815   AGGAGGAAGAGCCACGGAUUG   835 Target Full Sequence	1.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_006591670.1	ncRNA:21   UCCUCCUUCUCCGUGCCUAAC   1   |||||||||||*||||||||| targets:71   AGGAGGAAGAGCCACGGAUUG   91 Target Full Sequence	1.5	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget