Search result

BaseInfo

ncRNA ID novel_gma_miR4323
Species Glycine max
Class miRNA
Genome position Chr14:32765889-32766027 [+]
Reference genome Glycine_max_v2.0
Source SRR2045231;SRR2045237
Length 21
Mature sequence(if miRNA) 1 - CAAUCCGUGCCUCUUCCUCCU - 21
Stem-loop(if miRNA) --     C    C        C                     A     C    GC         C   
  CAAUC GUGC UCUUCCUC UCUACCAGCUCAAUAUCUUUC UUUCA CUUU  UUUUGUAAA UACA
  ||||| |||| |||||||| ||||||||||||||||||||| ||||| ||||  ||||||||| |||C
  GUUAG CACG AGAAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GAAA  AAAACAUUU AUGU
UG     A    A        C                     G     U    AC         A   
Stem-loop sequence CAAUCCGUGCCUCUUCCUCCUCUACCAGCUCAAUAUCUUUCAUUUCACCUUUGCUUUUGUAAACUACACUGUAAUUUACAAAACAAAAGUUGAAAGGAAAGAUAUUGAGCUGGUAGACGAGGAAGAAGCACAGAUUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779469.1
ncRNA:21   UCCUCCUUCUCCGUGCCUAAC   1
  |||||||||||*|||||||||
targets:815   AGGAGGAAGAGCCACGGAUUG   835

1.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_006586135.2
ncRNA:21   UCCUCCUUCUCCGUGCCUAAC   1
  |||||||||||*|||||||||
targets:815   AGGAGGAAGAGCCACGGAUUG   835

1.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_006591670.1
ncRNA:21   UCCUCCUUCUCCGUGCCUAAC   1
  |||||||||||*|||||||||
targets:71   AGGAGGAAGAGCCACGGAUUG   91

1.5 PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828) coding protein psRNATarget