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BaseInfo

ncRNA ID novel_gma_miR4312
Species Glycine max
Class miRNA
Genome position Chr13:12094981-12095115 [+]
Reference genome Glycine_max_v2.0
Source SRR2045231
Length 24
Mature sequence(if miRNA) 112 - CCAUUGUUGAGGAGAAGAAGAAUG - 135
Stem-loop(if miRNA) --                    C         -CC     AA      -AU    -UUUUUCCU    U
  UUCUUCUUCUUCUUAACAAU GAUAAUGCU   AAAGC  GUGAAG   UAAA         UACA U
  |||||||||||||||||||| |||||||||   |||||  ||||||   ||||         ||||
  AAGAAGAAGAGGAGUUGUUA CUAUUACGA   UUUCG  CACUUU   AUUU         AUGU C
GU                    C         ACU     AA      GUU    UUUAUCAUC    U
Stem-loop sequence UUCUUCUUCUUCUUAACAAUCGAUAAUGCUCCAAAGCAAGUGAAGAUUAAAUUUUUCCUUACAUUCUUGUACUACUAUUUUUUAUUGUUUCACAAGCUUUUCAAGCAUUAUCCAUUGUUGAGGAGAAGAAGAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006589309.2
ncRNA:24   GUAAGAAGAAGAGGAGUUGUUACC   1
  *=|||||=|||||||||||||*||
targets:1607   GGUUCUUUUUCUCCUCAACAAGGG   1630

2.5 PREDICTED: Glycine max uncharacterized LOC100782920 (LOC100782920), mRNA uncharacterized LOC100782920(LOC100782920) coding protein psRNATarget
XM_003553457.3
ncRNA:24   GUAAGAAGAAGAGGAGUUGUUACC   1
  |*||||||||*|*|||||||||||
targets:227   CCUUCUUCUUGUGCUCAACAAUGG   250

2.5 PREDICTED: Glycine max uncharacterized LOC100808067 (LOC100808067), mRNA uncharacterized LOC100808067(LOC100808067) coding protein psRNATarget