ncRNA ID | novel_gma_miR4310 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr13:12100653-12100870 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR2045230;SRR1295522 |
Length | 24 |
Mature sequence(if miRNA) | 195 - UAAACACGAACAAGGCCUGGGUCC - 218 |
Stem-loop(if miRNA) |
--                     U    A      C       C        C  CAUAAUU      AC       G A   UA    A   C   A    UUAUUUU   ACCUAGGCCUUGUUUGUGUUU GGCA ACUAUG UAACAUG ACCACUUU CU       AAAAUA  AGUAAGA U AAU  UUAU UUU UAU AGCU       C   ||||||||||||||||||||| |||| |||||| ||||||| |||||||| ||       ||||||  ||||||| | |||  |||| ||| ||| ||||   UGGGUCCGGAACAAGCACAAA CCGU UGAUAC AUUGUAC UGGUGAAA GA       UUUUAU  UCAUUCU A UUA  AAUA AAA AUA UCGA       A CC                     U    A      A       C        A  UCAUAAC      AC       G C   CA    G   A   G    CUUUUAU |
Stem-loop sequence | ACCUAGGCCUUGUUUGUGUUUUGGCAAACUAUGCUAACAUGCACCACUUUCCUCAUAAUUAAAAUAACAGUAAGAGUAAAUUAUUAUAUUUCUAUAAGCUUUAUUUUCAUAUUUUCAGCUGAUAAAAAGAUAAACAUUCAGUCUUACUCAUAUUUUCAAUACUAGAAAAGUGGUCCAUGUUAACAUAGUAUGCCUAAACACGAACAAGGCCUGGGUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003556525.3 |
|
2.0 | PREDICTED: Glycine max UPF0061 protein azo1574 (LOC100817183), mRNA | UPF0061 protein azo1574(LOC100817183) | coding protein | psRNATarget |