Search result

BaseInfo

ncRNA ID novel_gma_miR4299
Species Glycine max
Class miRNA
Genome position Chr6:5675285-5675410 [-]
Reference genome Glycine_max_v2.0
Source SRR2045230
Length 21
Mature sequence(if miRNA) 1 - UUCUGAUAGGAGAACGACACC - 21
Stem-loop(if miRNA) --     C  A  A    A           CAG             AUAAUAAA      -   
  UGUUG UC CU AUCA AAUUGGAGUUU   CUCAGUAAUCUAU        GGUUUG CAUU
  ||||| || || |||| |||||||||||   |||||||||||||        |||||| |||A
  ACAGC AG GG UAGU UUAAUCUCAAA   GAGUCAUUAGAUA        UCGAAC GUAA
CC     A  A  A    C           AUA             --CAACUG      U   
Stem-loop sequence UGUUGCUCACUAAUCAAAAUUGGAGUUUCAGCUCAGUAAUCUAUAUAAUAAAGGUUUGCAUUAAAUGUCAAGCUGUCAACAUAGAUUACUGAGAUAAAACUCUAAUUCUGAUAGGAGAACGACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003544488.3
ncRNA:21   CCACAGCAAGAGGAUAGUCUU   1
  |||||=|||||||||||||||
targets:1616   GGUGUUGUUCUCCUAUCAGAA   1636

1.0 PREDICTED: Glycine max delta(8)-fatty-acid desaturase 2-like (LOC100775880), mRNA delta(8)-fatty-acid desaturase 2-like(LOC100775880) coding protein psRNATarget
XM_003550220.3
ncRNA:21   CCACAGCAAGAGGAUAGUCUU   1
  ||||*=|||||||||||||||
targets:1732   GGUGGUGUUCUCCUAUCAGAA   1752

2.0 PREDICTED: Glycine max delta(8)-fatty-acid desaturase 2-like (LOC100776476), mRNA delta(8)-fatty-acid desaturase 2-like(LOC100776476) coding protein psRNATarget