Search result

BaseInfo

ncRNA ID novel_gma_miR4242
Species Glycine max
Class miRNA
Genome position Chr18:23392572-23392756 [-]
Reference genome Glycine_max_v2.0
Source SRR2045228
Length 22
Mature sequence(if miRNA) 164 - GUGUAAUUUUCUGUCUGGUUCC - 185
Stem-loop(if miRNA) --          --C    U     -CCCAUUCCAAACA       AAACAUGC       ----     CACAAAA     -- -      U  GAC     
  GUGUAAUUUU   UGUC GGUUC              UAUUUUG        UUGGGUU    GCAUC       CGUCA  C CAUCAA UG   CAGACC
  ||||||||||   |||| |||||              |||||||        |||||||    |||||       |||||  | |||||| ||   |||||U
  CAUAUUAAAA   GCAG UCAAG              AUAAAAC        AACCUAG    CGUAG       GCAGU  G GUAGUU AU   GUUUGA
UA          AUA    -     UAACAUAAAAUAAA       --------       UUAC     --AAGCA     AC A      C  -AU     
Stem-loop sequence GUGUAAUUUUCUGUCUGGUUCCCCAUUCCAAACAUAUUUUGAAACAUGCUUGGGUUGCAUCCACAAAACGUCACCAUCAAUUGGACCAGACCUAGUUUGUAUACUUGAUGAGCAUGACGACGAAGAUGCCAUUGAUCCAACAAAAUAAAAUAAAAUACAAUGAACUGACGAUAAAAAUUAUACAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014770773.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=||||||||||||
targets:129   GGAACCAGAUAGAAAAUUACAC   150

1.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106797069), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC106797069) coding protein psRNATarget
XM_006578263.2
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=||||||||||||
targets:901   GGAACCAGAUAGAAAAUUACAC   922

1.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102659618), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102659618) coding protein psRNATarget
XM_006600889.2
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=||||||||||||
targets:129   GGAACCAGAUAGAAAAUUACAC   150

1.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102666222), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102666222) coding protein psRNATarget
XM_014764660.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  ||||||||||||||||*|||||
targets:318   GGAACCAGACAGAAAACUACAC   339

1.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102666932), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102666932) coding protein psRNATarget
XM_014776675.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=|||||||||||=
targets:685   GGAACCAGAUAGAAAAUUACAU   706

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC100790217), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC100790217) coding protein psRNATarget
XM_006579970.2
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=|||||||||||=
targets:309   GGAACCAGAUAGAAAAUUACAU   330

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC100782801), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC100782801) coding protein psRNATarget
XM_014766295.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=|||||||||||=
targets:843   GGAACCAGAUAGAAAAUUACAU   864

2.5 PREDICTED: Glycine max uncharacterized LOC106794312 (LOC106794312), mRNA uncharacterized LOC106794312(LOC106794312) coding protein psRNATarget
XM_014771675.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=|||||||||||=
targets:685   GGAACCAGAUAGAAAAUUACAU   706

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106794141), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC106794141) coding protein psRNATarget
XM_006594783.2
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  |||||||||=|||||||||||=
targets:667   GGAACCAGAUAGAAAAUUACAU   688

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102670395), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC102670395) coding protein psRNATarget
XM_014778483.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  *|||||||||||=||||||||=
targets:111   AGAACCAGACAGGAAAUUACAU   132

2.5 PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106799588), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC106799588) coding protein psRNATarget
XM_014772472.1
ncRNA:22   CCUUGGUCUGUCUUUUAAUGUG   1
  *|||*|||||||||||*|||||
targets:111   AGAAGCAGACAGAAAACUACAC   132

2.5 PREDICTED: Glycine max uncharacterized LOC106797646 (LOC106797646), mRNA uncharacterized LOC106797646(LOC106797646) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.