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BaseInfo

ncRNA ID novel_gma_miR4218
Species Glycine max
Class miRNA
Genome position Chr11:15622014-15622090 [+]
Reference genome Glycine_max_v2.0
Source SRR1294487
Length 24
Mature sequence(if miRNA) 1 - AAGGAGAAGAGGAAAAGUGGAGCU - 24
Stem-loop(if miRNA) --A          GA    U GA  U  --G   UUG   U
   AGGAGAAGAG  AAAG G  GC GA   GCG   UAG G
   ||||||||||  |||| |  || ||   |||   |||
   UUCUCUUUUC  UUUC C  CG CU   UGC   GUC U
AUG          UG    - UA  -  AAG   -CA   U
Stem-loop sequence AAGGAGAAGAGGAAAAGUGGAGCUGAGGCGUUGUAGUGUUCUGACCGUGAAUCGCAUCCUUUGUCUUUUCUCUUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006596751.1
ncRNA:24   UCGAGGUGAAAAGGAGAAGAGGAA   1
  =|||||||||||||||||||||||
targets:44   GGCUCCACUUUUCCUCUUCUCCUU   67

0.0 PREDICTED: Glycine max uncharacterized LOC102660473 (LOC102660473), mRNA uncharacterized LOC102660473(LOC102660473) coding protein psRNATarget
XM_006592353.2
ncRNA:24   UCGAGGUGAAAAGGAGAAGAGGAA   1
  **||=||||*|||=||||||||||
targets:41   CUCUUCACUCUUCUUCUUCUCCUU   64

2.5 PREDICTED: Glycine max uncharacterized LOC102661367 (LOC102661367), transcript variant X1, mRNA uncharacterized LOC102661367(LOC102661367) coding protein psRNATarget