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BaseInfo

ncRNA ID novel_gma_miR4215
Species Glycine max
Class miRNA
Genome position Chr12:14532278-14532435 [-]
Reference genome Glycine_max_v2.0
Source SRR2045228
Length 24
Mature sequence(if miRNA) 1 - AAUAAGAAUGUGACAUGUGGCAGU - 24
Stem-loop(if miRNA) --UA                                      U             ---A      GAAAACAACA   C
    UCACGUGUCACGUUCUUAUUGGAUGAUGACUGUCAUGU UCAUGUUCUGAUU    GUCAAU          AUG A
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    ||||||          ||| U
    GGUGUACAGUGUAAGAAUAACCUACUACUGACAGUGCA AGUACAAGACUAA    CAGUUG          UAC U
UGAC                                      C             CCUA      AGGUAUUUUC   U
Stem-loop sequence UAUCACGUGUCACGUUCUUAUUGGAUGAUGACUGUCAUGUUUCAUGUUCUGAUUAGUCAAUGAAAACAACAAUGCAUUUCAUCUUUUAUGGAGUUGACAUCCAAUCAGAACAUGACACGUGACAGUCAUCAUCCAAUAAGAAUGUGACAUGUGGCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003549182.3
ncRNA:24   UGACGGUGUACAGUGUAAGAAUAA   1
  |=|*||||||*||||||||*||||
targets:95   AUUCCCACAUAUCACAUUCAUAUU   118

2.5 PREDICTED: Glycine max molybdate transporter 1-like (LOC100779658), mRNA molybdate transporter 1-like(LOC100779658) coding protein psRNATarget
HI410445.1
ncRNA:24   UGACGGUGUACAGUGUAAGAAUAA   1
  |*||==|==|||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUU   68

3.0 Sequence 8570 from Patent EP2074227 NA coding protein psRNATarget
LQ242575.1
ncRNA:24   UGACGGUGUACAGUGUAAGAAUAA   1
  |*||==|==|||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUU   68

3.0 Sequence 8570 from Patent EP2985353 NA coding protein psRNATarget
JB170906.1
ncRNA:24   UGACGGUGUACAGUGUAAGAAUAA   1
  |*||==|==|||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUU   68

3.0 Sequence 8570 from Patent EP2559767 NA coding protein psRNATarget