ncRNA ID | novel_gma_miR4213 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:23429935-23430018 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR2045228;SRR2045231;SRR1295517;SRR1295518;SRR1295520;SRR1295521;SRR1295525;SRR1451610 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GAAAGAGAGUGAACUGUAGAAGAG - 24 |
Stem-loop(if miRNA) |
--             --C            -CAU UC    CU   GAAAGAGAGUGAA   UGUAGAAGAGAG    G  GAUU  U   |||||||||||||   ||||||||||||    |  ||||  C   CUUUUUUUUACUU   GUAUUUUUUCUC    C  CUGA  U GC             UUU            CUUU UU    UU |
Stem-loop sequence | GAAAGAGAGUGAACUGUAGAAGAGAGCAUGUCGAUUCUUCUUUAGUCUUCUUUCCUCUUUUUUAUGUUUUUCAUUUUUUUUCCG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003524845.3 |
|
2.5 | PREDICTED: Glycine max probable arabinosyltransferase ARAD1 (LOC100797646), transcript variant X1, mRNA | probable arabinosyltransferase ARAD1(LOC100797646) | coding protein | psRNATarget | |||||||||
XM_003523501.3 |
|
2.5 | PREDICTED: Glycine max peptidyl-prolyl cis-trans isomerase FKBP53-like (LOC100781174), mRNA | peptidyl-prolyl cis-trans isomerase FKBP53-like(LOC100781174) | coding protein | psRNATarget |