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BaseInfo

ncRNA ID novel_gma_miR4190
Species Glycine max
Class miRNA
Genome position Chr12:419801-419894 [+]
Reference genome Glycine_max_v2.0
Source SRR1753108
Length 24
Mature sequence(if miRNA) 1 - UCGAAAUUGAACGAGGAAUCGCCU - 24
Stem-loop(if miRNA) --UC         C       -  CCU  CG   CC   -GAC   UU
    GAAAUUGAA GAGGAAU CG   GA  GGA  UCU    UGC  U
    ||||||||| ||||||| ||   ||  |||  |||    |||
    UUUUAACUU CUCCUUA GU   CU  UCU  AGG    ACG  A
CGAU         A       A  CCC  AA   CA   AAAU   UC
Stem-loop sequence UCGAAAUUGAACGAGGAAUCGCCUGACGGGACCUCUGACUGCUUUACUGCAUAAAGGAACUCUAAUCCCCUGAAUUCCUCAUUCAAUUUUUAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:24   UCCGCUAAGGAGCAAGUUAAAGCU   1
  |||*||||||||*|||||||||||
targets:326   AGGGGAUUCCUCCUUCAAUUUCGA   349

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:24   UCCGCUAAGGAGCAAGUUAAAGCU   1
  |||*||||||||*|||||||||||
targets:921   AGGGGAUUCCUCCUUCAAUUUCGA   944

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget