ncRNA ID | novel_gma_miR4172 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr19:2392132-2392203 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1753108 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UCUUGUUAUCGUCCAUCAUUACCU - 24 |
Stem-loop(if miRNA) |
--       A      A     ACC  CUCAAAUAC   UCUUGUU UCGUCC UCAUU   UA         G   ||||||| |||||| |||||   ||         U   GGAAUAA AGCAGG AGUAG   CA         G CA       G      -     AAA  CUGAAUACA |
Stem-loop sequence | UCUUGUUAUCGUCCAUCAUUACCUACUCAAAUACGUGACAUAAGUCACAAAGAUGAGGACGAGAAUAAGGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006576653.2 |
|
2.5 | PREDICTED: Glycine max glycine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC100787365), transcript variant X2, mRNA | glycine--tRNA ligase, chloroplastic/mitochondrial 2(LOC100787365) | coding protein | psRNATarget | |||||||||
XM_003520376.3 |
|
2.5 | PREDICTED: Glycine max glycine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC100787365), transcript variant X1, mRNA | glycine--tRNA ligase, chloroplastic/mitochondrial 2(LOC100787365) | coding protein | psRNATarget |