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BaseInfo

ncRNA ID novel_gma_miR4172
Species Glycine max
Class miRNA
Genome position Chr19:2392132-2392203 [+]
Reference genome Glycine_max_v2.0
Source SRR1753108
Length 24
Mature sequence(if miRNA) 1 - UCUUGUUAUCGUCCAUCAUUACCU - 24
Stem-loop(if miRNA) --       A      A     ACC  CUCAAAUAC
  UCUUGUU UCGUCC UCAUU   UA         G
  ||||||| |||||| |||||   ||         U
  GGAAUAA AGCAGG AGUAG   CA         G
CA       G      -     AAA  CUGAAUACA
Stem-loop sequence UCUUGUUAUCGUCCAUCAUUACCUACUCAAAUACGUGACAUAAGUCACAAAGAUGAGGACGAGAAUAAGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576653.2
ncRNA:24   UCCAUUACUACCUGCUAUUGUUCU   1
  **||||||=||||||||=||||||
targets:2856   UUGUAAUGGUGGACGAUGACAAGA   2879

2.5 PREDICTED: Glycine max glycine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC100787365), transcript variant X2, mRNA glycine--tRNA ligase, chloroplastic/mitochondrial 2(LOC100787365) coding protein psRNATarget
XM_003520376.3
ncRNA:24   UCCAUUACUACCUGCUAUUGUUCU   1
  **||||||=||||||||=||||||
targets:3262   UUGUAAUGGUGGACGAUGACAAGA   3285

2.5 PREDICTED: Glycine max glycine--tRNA ligase, chloroplastic/mitochondrial 2 (LOC100787365), transcript variant X1, mRNA glycine--tRNA ligase, chloroplastic/mitochondrial 2(LOC100787365) coding protein psRNATarget