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BaseInfo

ncRNA ID novel_gma_miR4148
Species Glycine max
Class miRNA
Genome position Chr8:18644677-18644803 [-]
Reference genome Glycine_max_v2.0
Source SRR1753107;SRR1295519;SRR1295520;SRR1295526;SRR1295530
Length 24
Mature sequence(if miRNA) 104 - CUUCCGGAAGAACAAUUUGUGCUC - 127
Stem-loop(if miRNA) --       A            GC   A  AA     CCU        A   C           A
  CUUCCGG AGAACAAUUUGU  UCU UC  AAGAA   UUUUUCCG AAA UUUCCGGAAGA C
  ||||||| ||||||||||||  ||| ||  |||||   |||||||| ||| |||||||||||
  GAAGGCU UCUUGUUAAAUA  AGA GG  UUCUU   AAAAAGGC UUU GAAGGCCUUCU C
AA       A            --   A  CC     -CC        C   C           U
Stem-loop sequence CUUCCGGAAGAACAAUUUGUGCUCUAUCAAAAGAACCUUUUUUCCGAAAACUUUCCGGAAGAACCUUCUUCCGGAAGCUUUCCGGAAAAACCUUCUUCCGGAAGAAUAAAUUGUUCUAUCGGAAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550641.3
ncRNA:24   CUCGUGUUUAACAAGAAGGCCUUC   1
  ***|=|||||||||||||||*|||
targets:267   CUCCGCAAAUUGUUCUUCCGCAAG   290

1.5 PREDICTED: Glycine max formin-like protein 13 (LOC100799319), transcript variant X1, mRNA formin-like protein 13(LOC100799319) coding protein psRNATarget
XM_006600482.2
ncRNA:24   CUCGUGUUUAACAAGAAGGCCUUC   1
  ***|=|||||||||||||||*|||
targets:267   CUCCGCAAAUUGUUCUUCCGCAAG   290

1.5 PREDICTED: Glycine max formin-like protein 13 (LOC100799319), transcript variant X2, mRNA formin-like protein 13(LOC100799319) coding protein psRNATarget
XM_006575247.2
ncRNA:24   CUCGUGUUUAACAAGAAGGCCUUC   1
  ***|=|||||||||||||||*|||
targets:292   CUCCGCAAAUUGUUCUUCCGCAAG   315

1.5 PREDICTED: Glycine max formin-like protein 13 (LOC100786096), transcript variant X1, mRNA formin-like protein 13(LOC100786096) coding protein psRNATarget
XM_006575248.2
ncRNA:24   CUCGUGUUUAACAAGAAGGCCUUC   1
  ***|=|||||||||||||||*|||
targets:292   CUCCGCAAAUUGUUCUUCCGCAAG   315

1.5 PREDICTED: Glycine max formin-like protein 13 (LOC100786096), transcript variant X2, mRNA formin-like protein 13(LOC100786096) coding protein psRNATarget