ncRNA ID | novel_gma_miR4148 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr8:18644677-18644803 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1753107;SRR1295519;SRR1295520;SRR1295526;SRR1295530 |
Length | 24 |
Mature sequence(if miRNA) | 104 - CUUCCGGAAGAACAAUUUGUGCUC - 127 |
Stem-loop(if miRNA) |
--       A            GC   A  AA     CCU        A   C           A   CUUCCGG AGAACAAUUUGU  UCU UC  AAGAA   UUUUUCCG AAA UUUCCGGAAGA C   ||||||| ||||||||||||  ||| ||  |||||   |||||||| ||| |||||||||||   GAAGGCU UCUUGUUAAAUA  AGA GG  UUCUU   AAAAAGGC UUU GAAGGCCUUCU C AA       A            --   A  CC     -CC        C   C           U |
Stem-loop sequence | CUUCCGGAAGAACAAUUUGUGCUCUAUCAAAAGAACCUUUUUUCCGAAAACUUUCCGGAAGAACCUUCUUCCGGAAGCUUUCCGGAAAAACCUUCUUCCGGAAGAAUAAAUUGUUCUAUCGGAAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003550641.3 |
|
1.5 | PREDICTED: Glycine max formin-like protein 13 (LOC100799319), transcript variant X1, mRNA | formin-like protein 13(LOC100799319) | coding protein | psRNATarget | |||||||||
XM_006600482.2 |
|
1.5 | PREDICTED: Glycine max formin-like protein 13 (LOC100799319), transcript variant X2, mRNA | formin-like protein 13(LOC100799319) | coding protein | psRNATarget | |||||||||
XM_006575247.2 |
|
1.5 | PREDICTED: Glycine max formin-like protein 13 (LOC100786096), transcript variant X1, mRNA | formin-like protein 13(LOC100786096) | coding protein | psRNATarget | |||||||||
XM_006575248.2 |
|
1.5 | PREDICTED: Glycine max formin-like protein 13 (LOC100786096), transcript variant X2, mRNA | formin-like protein 13(LOC100786096) | coding protein | psRNATarget |