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BaseInfo

ncRNA ID novel_gma_miR4141
Species Glycine max
Class miRNA
Genome position Chr5:23627785-23627884 [+]
Reference genome Glycine_max_v2.0
Source SRR1753107
Length 22
Mature sequence(if miRNA) 1 - AUAAAAAACCGAUGUUAACUGU - 22
Stem-loop(if miRNA) --A                    UCAAUA CAACACAUUCAUUAACAUUGG
   UAAAAAACCGAUGUUAACUG      G                     U
   ||||||||||||||||||||      |                     U
   AUUUUUUGGCUACAAUUGAU      A                     U
AAA                    ---UUA AUUGUAGCCAAAAAAAUGUCU
Stem-loop sequence AUAAAAAACCGAUGUUAACUGUCAAUAGCAACACAUUCAUUAACAUUGGUUUUCUGUAAAAAAACCGAUGUUAAAUUUAGUUAACAUCGGUUUUUUAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588840.2
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  *||||||||||||||||*||||
targets:17   UCAGUUAACAUCGGUUUCUUAU   38

1.5 PREDICTED: Glycine max actin-related protein 7-like (LOC100803056), transcript variant X1, mRNA actin-related protein 7-like(LOC100803056) coding protein psRNATarget
XM_006588741.2
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  *==|||||||||||||||*|||
targets:2931   UUGGUUAACAUCGGUUUUGUAU   2952

1.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA phosphoinositide phosphatase SAC1-like(LOC102670366) coding protein psRNATarget
XM_014763017.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  *==|||||||||||||||*|||
targets:3027   UUGGUUAACAUCGGUUUUGUAU   3048

1.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA phosphoinositide phosphatase SAC1-like(LOC102660101) coding protein psRNATarget
HI410543.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:16   ACAUUUAACAUCGGUUUUUUAA   37

2.0 Sequence 8668 from Patent EP2074227 NA coding protein psRNATarget
HI410543.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:57   ACAUUUAACAUCGGUUUUUUAA   78

2.0 Sequence 8668 from Patent EP2074227 NA coding protein psRNATarget
HI410543.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:117   ACAUUUAACAUCGGUUUUUUAA   138

2.0 Sequence 8668 from Patent EP2074227 NA coding protein psRNATarget
HI410543.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:158   ACAUUUAACAUCGGUUUUUUAA   179

2.0 Sequence 8668 from Patent EP2074227 NA coding protein psRNATarget
JB171004.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:16   ACAUUUAACAUCGGUUUUUUAA   37

2.0 Sequence 8668 from Patent EP2559767 NA coding protein psRNATarget
JB171004.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:57   ACAUUUAACAUCGGUUUUUUAA   78

2.0 Sequence 8668 from Patent EP2559767 NA coding protein psRNATarget
JB171004.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:117   ACAUUUAACAUCGGUUUUUUAA   138

2.0 Sequence 8668 from Patent EP2559767 NA coding protein psRNATarget
JB171004.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:158   ACAUUUAACAUCGGUUUUUUAA   179

2.0 Sequence 8668 from Patent EP2559767 NA coding protein psRNATarget
LQ242673.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:16   ACAUUUAACAUCGGUUUUUUAA   37

2.0 Sequence 8668 from Patent EP2985353 NA coding protein psRNATarget
LQ242673.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:57   ACAUUUAACAUCGGUUUUUUAA   78

2.0 Sequence 8668 from Patent EP2985353 NA coding protein psRNATarget
LQ242673.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:117   ACAUUUAACAUCGGUUUUUUAA   138

2.0 Sequence 8668 from Patent EP2985353 NA coding protein psRNATarget
LQ242673.1
ncRNA:22   UGUCAAUUGUAGCCAAAAAAUA   1
  |||*|||||||||||||||||*
targets:158   ACAUUUAACAUCGGUUUUUUAA   179

2.0 Sequence 8668 from Patent EP2985353 NA coding protein psRNATarget