Search result

BaseInfo

ncRNA ID	novel_gma_miR4121
Species	Glycine max
Class	miRNA
Genome position	Chr9:4534558-4534761 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1753105
Length	24
Mature sequence(if miRNA)	181 - AUUAAAAUGUAAACUAUAGAGACU - 204
Stem-loop(if miRNA)	-U  -                     -  -G     --------         A           CAUU       AUAAUUCAUA          CU        U   UC CUAUAGUUUAUAUUUUAAUUC CU  UAGUU        UUGAAAGUG UCUUUUUAGUC    UAGUUUC          CUUUUUUAGU  CUAUAGUU U   || ||||||||||||||||||||| ||  |||||        ||||||||| |||||||||||    |||||||          ||||||||||  ||||||||   AG GAUAUCAAAUGUAAAAUUAAG GA  AUCAG        AAUUUUUAU AGAAAAAUCAG    AUUAAAG          GAGAAAAUCA  GAUAUUAA C UC  A                     A  AA     UAAGAUCA         A           UAAU       AUAAAAUUAA          AG        A
Stem-loop sequence	UUCCUAUAGUUUAUAUUUUAAUUCCUGUAGUUUUGAAAGUGAUCUUUUUAGUCCAUUUAGUUUCAUAAUUCAUACUUUUUUAGUCUCUAUAGUUUUCAAAUUAUAGGAACUAAAAGAGAAUUAAAAUAGAAAUUAUAAUGACUAAAAAGAAUAUUUUUAAACUAGAAUGACUAAAAGAGAAUUAAAAUGUAAACUAUAGAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006577048.2	ncRNA:24   UCAGAGAUAUCAAAUGUAAAAUUA   1   ||||*||||||||||||||||||| targets:1927   AGUCCCUAUAGUUUACAUUUUAAU   1950 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA	uncharacterized LOC100819268(LOC100819268)	coding protein	psRNATarget
XM_014773932.1	ncRNA:24   UCAGAGAUAUCAAAUGUAAAAUUA   1   ||||*||||||||||||||||||| targets:2037   AGUCCCUAUAGUUUACAUUUUAAU   2060 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA	uncharacterized LOC100819268(LOC100819268)	coding protein	psRNATarget
XM_003543229.3	ncRNA:24   UCAGAGAUAUCAAAUGUAAAAUUA   1   *||||*||||*||||||||||||| targets:949   UGUCUAUAUAAUUUACAUUUUAAU   972 Target Full Sequence	2.0	PREDICTED: Glycine max protein sym-1-like (LOC100796063), mRNA	protein sym-1-like(LOC100796063)	coding protein	psRNATarget