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BaseInfo

ncRNA ID novel_gma_miR4105
Species Glycine max
Class miRNA
Genome position Chr3:30177370-30177442 [-]
Reference genome Glycine_max_v2.0
Source SRR1753105
Length 24
Mature sequence(if miRNA) 1 - UCACACAGAUUGUUGAUCCGUAUG - 24
Stem-loop(if miRNA) --       UG         A              U
  UACGGAU  ACAAUUUGU UGAGCCAUACGGAU A
  |||||||  ||||||||| |||||||||||||| A
  AUGCCUA  UGUUAGACA ACUUGGUAUGCCUA U
GU       GU         C              U
Stem-loop sequence UACGGAUUGACAAUUUGUAUGAGCCAUACGGAUUAAUUAUCCGUAUGGUUCACACAGAUUGUUGAUCCGUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF529302.2
ncRNA:24   GUAUGCCUAGUUGUUAGACACACU   1
  |=|=*|*|*||||||||||||||=
targets:873   CGUGAGUAACAACAAUCUGUGUGG   896

3.0 Glycine max polygalacturonase inhibitor protein mRNA, complete cds NA coding protein psRNATarget
NM_001250937.2
ncRNA:24   GUAUGCCUAGUUGUUAGACACACU   1
  |=|=*|*|*||||||||||||||=
targets:1634   CGUGAGUAACAACAAUCUGUGUGG   1657

3.0 Glycine max polygalacturonase inhibitor protein (PGIP4), mRNA polygalacturonase inhibitor protein(LOC548041) coding protein psRNATarget