Search result

BaseInfo

ncRNA ID novel_gma_miR4056
Species Glycine max
Class miRNA
Genome position Chr2:45343736-45343818 [-]
Reference genome Glycine_max_v2.0
Source SRR1753104;SRR3160568;SRR1451604;SRR1451608;SRR1451620
Length 22
Mature sequence(if miRNA) 1 - UCUUGACUUUGGACUUUUGGGU - 22
Stem-loop(if miRNA) --     -        A                    C   U
  CCGAA GUCCAAAG CAAGAAAUUAUCUACCAGCA UGA U
  ||||| |||||||| |||||||||||||||||||| |||
  GGUUU CAGGUUUC GUUCUUUAAUAGGUGGUCGU ACU G
UG     U        A                    U   A
Stem-loop sequence CCGAAGUCCAAAGACAAGAAAUUAUCUACCAGCACUGAUUGAUCAUUGCUGGUGGAUAAUUUCUUGACUUUGGACUUUUGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576238.2
ncRNA:22   UGGGUUUUCAGGUUUCAGUUCU   1
  ***|||=|||||||||*|||||
targets:759   UGGCAAGAGUCCAAAGCCAAGA   780

2.5 PREDICTED: Glycine max lipase 1-like (LOC100775258), transcript variant X2, mRNA lipase 1-like(LOC100775258) coding protein psRNATarget
XM_006576237.2
ncRNA:22   UGGGUUUUCAGGUUUCAGUUCU   1
  ***|||=|||||||||*|||||
targets:994   UGGCAAGAGUCCAAAGCCAAGA   1015

2.5 PREDICTED: Glycine max lipase 1-like (LOC100775258), transcript variant X1, mRNA lipase 1-like(LOC100775258) coding protein psRNATarget