ncRNA ID | ath-miR403-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:19415052-19415186 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 26 - UGUUUUGUGCUUGAAUCUAAUU - 47 |
Stem-loop(if miRNA) |
UUGUCAUUAGA    U  U     AU    U    U                -G  UUUAUGUAAGAGAUUCU            AGAG CG AUUAC  GUUU GUGC UGAAUCUAAUUCAACA  GC                 U            |||| || |||||  |||| |||| ||||||||||||||||  ||            UUUC GU UAAUG  CAAA CACG ACUUAGAUUAGGUUGU  UU                 U -----------    U  C     CU    -    C                UG  UCUAAUAUCCUUAACAA |
Stem-loop sequence | UUGUCAUUAGAAGAGUCGUAUUACAUGUUUUGUGCUUGAAUCUAAUUCAACAGGCUUUAUGUAAGAGAUUCUUUAACAAUUCCUAUAAUCUUUGUUGUUGGAUUAGAUUCACGCACAAACUCGUAAUCUGUCUUU |
1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |
2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
3 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
4 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |