Search result

BaseInfo

ncRNA ID	novel_gma_miR4047
Species	Glycine max
Class	miRNA
Genome position	Chr19:34825491-34825561 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1753104
Length	24
Mature sequence(if miRNA)	1 - GAUCAAGUUGAUUCGUAAAAGACU - 24
Stem-loop(if miRNA)	--UUAC    AG                 -C  UAA       UUAC  AUCAACUUGAUCCGUAA  UG   C       ||||  |||||||||||||||||  ||       AAUG  UAGUUGAACUAGGCAUU  AC   A UCAGAA    CU                 CA  CAC
Stem-loop sequence	UUACUUACAGAUCAACUUGAUCCGUAACUGUAACACACCAACUUACGGAUCAAGUUGAUUCGUAAAAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK245517.1	ncRNA:24   UCAGAAAAUGCUUAGUUGAACUAG   1   **|=|*||||||||||=||||||| targets:2917   CCUUUGUUACGAAUCAGCUUGAUC   2940 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-32-M22	NA	coding protein	psRNATarget
XM_003526860.3	ncRNA:24   UCAGAAAAUGCUUAGUUGAACUAG   1   **|=|*||||||||||=||||||| targets:3210   CCUUUGUUACGAAUCAGCUUGAUC   3233 Target Full Sequence	2.5	PREDICTED: Glycine max chaperone protein ClpD, chloroplastic (LOC100793074), mRNA	chaperone protein ClpD, chloroplastic(LOC100793074)	coding protein	psRNATarget
AF047051.1	ncRNA:24   UCAGAAAAUGCUUAGUUGAACUAG   1   ***|||||=|||||||||*||||| targets:246   CUGCUUUUGCGAAUCAACAUGAUC   269 Target Full Sequence	2.5	Glycine max ribosomal protein L41 mRNA, partial cds	NA	coding protein	psRNATarget
XM_006574797.2	ncRNA:24   UCAGAAAAUGCUUAGUUGAACUAG   1   |||=|*||==|||||||||||||| targets:2217   AGUUUCUUGUGAAUCAACUUGAUC   2240 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100791584 (LOC100791584), transcript variant X1, mRNA	uncharacterized LOC100791584(LOC100791584)	coding protein	psRNATarget
XM_014774995.1	ncRNA:24   UCAGAAAAUGCUUAGUUGAACUAG   1   **||*||||=*||||||||||||* targets:1062   CAUCCUUUAUCAAUCAACUUGAUG   1085 Target Full Sequence	3.0	PREDICTED: Glycine max histone-lysine N-methyltransferase ASHR1 (LOC100789518), transcript variant X2, mRNA	histone-lysine N-methyltransferase ASHR1(LOC100789518)	coding protein	psRNATarget
XM_006578918.2	ncRNA:24   UCAGAAAAUGCUUAGUUGAACUAG   1   **||*||||=*||||||||||||* targets:1181   CAUCCUUUAUCAAUCAACUUGAUG   1204 Target Full Sequence	3.0	PREDICTED: Glycine max histone-lysine N-methyltransferase ASHR1 (LOC100789518), transcript variant X1, mRNA	histone-lysine N-methyltransferase ASHR1(LOC100789518)	coding protein	psRNATarget