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BaseInfo

ncRNA ID novel_gma_miR4044
Species Glycine max
Class miRNA
Genome position Chr18:11853277-11853353 [+]
Reference genome Glycine_max_v2.0
Source SRR1753104;SRR1753105
Length 22
Mature sequence(if miRNA) 1 - CAUUUCUUGGUUGUCUUGGGCC - 22
Stem-loop(if miRNA) CAUUUCUUG       UGGGCCUGAUAUCAUCAUAGACAAC
         GUUGUCU                         A
         |||||||
         GAGGUAC                         U
-------CG       CAACACGUACUUCGCUUUUAUGUAC
Stem-loop sequence CAUUUCUUGGUUGUCUUGGGCCUGAUAUCAUCAUAGACAACAUCAUGUAUUUUCGCUUCAUGCACAACCAUGGAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006575981.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=|||||||||||||||||||
targets:568   GGUCCAAGACAACCAAGAAAUG   589

0.0 PREDICTED: Glycine max uncharacterized LOC100809089 (LOC100809089), mRNA uncharacterized LOC100809089(LOC100809089) coding protein psRNATarget
XM_003554895.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||||=||||||
targets:1069   GGUCCAAGACAACCAGGAAAUG   1090

1.5 PREDICTED: Glycine max uncharacterized LOC100787031 (LOC100787031), mRNA uncharacterized LOC100787031(LOC100787031) coding protein psRNATarget
XM_006574123.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||||=||||||
targets:1069   GGUCCAAGACAACCAGGAAAUG   1090

1.5 PREDICTED: Glycine max uncharacterized LOC100812270 (LOC100812270), mRNA uncharacterized LOC100812270(LOC100812270) coding protein psRNATarget
XM_014770495.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||||=||||||
targets:1069   GGUCCAAGACAACCAGGAAAUG   1090

1.5 PREDICTED: Glycine max uncharacterized LOC100813458 (LOC100813458), mRNA uncharacterized LOC100813458(LOC100813458) coding protein psRNATarget
XM_006596753.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||||||=||||
targets:988   GGUCCAAGACAACCAAGGAAUG   1009

1.5 PREDICTED: Glycine max uncharacterized LOC100801574 (LOC100801574), mRNA uncharacterized LOC100801574(LOC100801574) coding protein psRNATarget
XM_006591701.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||||=||||||
targets:1060   GGUCCAAGACAACCAGGAAAUG   1081

1.5 PREDICTED: Glycine max uncharacterized LOC100782582 (LOC100782582), mRNA uncharacterized LOC100782582(LOC100782582) coding protein psRNATarget
XM_006588118.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||||=||||||
targets:973   GGUCCAAGACAACCAGGAAAUG   994

1.5 PREDICTED: Glycine max uncharacterized LOC102663418 (LOC102663418), mRNA uncharacterized LOC102663418(LOC102663418) coding protein psRNATarget
XM_006587971.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||||||||||=||||||||
targets:10   GGUCCAAGACAACUAAGAAAUG   31

1.5 PREDICTED: Glycine max uncharacterized LOC100784324 (LOC100784324), mRNA uncharacterized LOC100784324(LOC100784324) coding protein psRNATarget
XM_014774189.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  *|=||||||||||||=||||||
targets:832   AGUCCAAGACAACCAGGAAAUG   853

1.5 PREDICTED: Glycine max uncharacterized LOC100784728 (LOC100784728), mRNA uncharacterized LOC100784728(LOC100784728) coding protein psRNATarget
XM_003523529.3
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ***|||||||||*|||||||||
targets:280   AUACCAAGACAAGCAAGAAAUG   301

1.5 PREDICTED: Glycine max uncharacterized LOC100798510 (LOC100798510), mRNA uncharacterized LOC100798510(LOC100798510) coding protein psRNATarget
XM_006580615.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||==|=||||||||||||||||
targets:970   GGUUCGAGACAACCAAGAAAUG   991

2.0 PREDICTED: Glycine max uncharacterized LOC100780468 (LOC100780468), mRNA uncharacterized LOC100780468(LOC100780468) coding protein psRNATarget
XM_006588039.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ||=||*|||||=||||||||||
targets:1069   GGUCCCAGACAGCCAAGAAAUG   1090

2.5 PREDICTED: Glycine max uncharacterized LOC100812852 (LOC100812852), mRNA uncharacterized LOC100812852(LOC100812852) coding protein psRNATarget
XM_003533609.3
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  ***=|||||=||||||||||||
targets:3473   CAGUCAAGAUAACCAAGAAAUG   3494

2.5 PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase PXC2 (LOC100813535), mRNA leucine-rich repeat receptor-like protein kinase PXC2(LOC100813535) coding protein psRNATarget
BT097969.1
ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1
  **||||||=|||||||*|||||
targets:479   ACCCCAAGGCAACCAACAAAUG   500

2.5 Soybean clone JCVI-FLGm-11L20 unknown mRNA NA coding protein psRNATarget
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