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BaseInfo

ncRNA ID	novel_gma_miR4039
Species	Glycine max
Class	miRNA
Genome position	Chr17:35538413-35538489 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1753104;SRR1753105
Length	22
Mature sequence(if miRNA)	1 - CAUUUCUUGGUUGUCUUGGGCC - 22
Stem-loop(if miRNA)	CA            - U    CC   UAUCAU   A  C   UUUCUUGGUUGU C UGGG  CGA      CAU GA A   |||||||||||| | ||||  |||      ||| || A   GAGGAACCAACA G ACUU  GCU      GUA CU C CG            C U    -C   -UUUAU   -  A
Stem-loop sequence	CAUUUCUUGGUUGUCUUGGGCCCGAUAUCAUCAUAGACAACAUCAUGUAUUUUCGCUUCAUGCACAACCAAGGAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006575981.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||||||||| targets:568   GGUCCAAGACAACCAAGAAAUG   589 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100809089 (LOC100809089), mRNA	uncharacterized LOC100809089(LOC100809089)	coding protein	psRNATarget
XM_003554895.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||=|||||| targets:1069   GGUCCAAGACAACCAGGAAAUG   1090 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100787031 (LOC100787031), mRNA	uncharacterized LOC100787031(LOC100787031)	coding protein	psRNATarget
XM_006574123.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||=|||||| targets:1069   GGUCCAAGACAACCAGGAAAUG   1090 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100812270 (LOC100812270), mRNA	uncharacterized LOC100812270(LOC100812270)	coding protein	psRNATarget
XM_014770495.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||=|||||| targets:1069   GGUCCAAGACAACCAGGAAAUG   1090 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100813458 (LOC100813458), mRNA	uncharacterized LOC100813458(LOC100813458)	coding protein	psRNATarget
XM_006596753.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||||=|||| targets:988   GGUCCAAGACAACCAAGGAAUG   1009 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100801574 (LOC100801574), mRNA	uncharacterized LOC100801574(LOC100801574)	coding protein	psRNATarget
XM_006591701.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||=|||||| targets:1060   GGUCCAAGACAACCAGGAAAUG   1081 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100782582 (LOC100782582), mRNA	uncharacterized LOC100782582(LOC100782582)	coding protein	psRNATarget
XM_006588118.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||||=|||||| targets:973   GGUCCAAGACAACCAGGAAAUG   994 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102663418 (LOC102663418), mRNA	uncharacterized LOC102663418(LOC102663418)	coding protein	psRNATarget
XM_006587971.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||||||||||=|||||||| targets:10   GGUCCAAGACAACUAAGAAAUG   31 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100784324 (LOC100784324), mRNA	uncharacterized LOC100784324(LOC100784324)	coding protein	psRNATarget
XM_014774189.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   *|=||||||||||||=|||||| targets:832   AGUCCAAGACAACCAGGAAAUG   853 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100784728 (LOC100784728), mRNA	uncharacterized LOC100784728(LOC100784728)	coding protein	psRNATarget
XM_003523529.3	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ***|||||||||*||||||||| targets:280   AUACCAAGACAAGCAAGAAAUG   301 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100798510 (LOC100798510), mRNA	uncharacterized LOC100798510(LOC100798510)	coding protein	psRNATarget
XM_006580615.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||==|=|||||||||||||||| targets:970   GGUUCGAGACAACCAAGAAAUG   991 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100780468 (LOC100780468), mRNA	uncharacterized LOC100780468(LOC100780468)	coding protein	psRNATarget
XM_006588039.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ||=||*|||||=|||||||||| targets:1069   GGUCCCAGACAGCCAAGAAAUG   1090 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100812852 (LOC100812852), mRNA	uncharacterized LOC100812852(LOC100812852)	coding protein	psRNATarget
XM_003533609.3	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   ***=|||||=|||||||||||| targets:3473   CAGUCAAGAUAACCAAGAAAUG   3494 Target Full Sequence	2.5	PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase PXC2 (LOC100813535), mRNA	leucine-rich repeat receptor-like protein kinase PXC2(LOC100813535)	coding protein	psRNATarget
BT097969.1	ncRNA:22   CCGGGUUCUGUUGGUUCUUUAC   1   **||||||=|||||||*||||| targets:479   ACCCCAAGGCAACCAACAAAUG   500 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-11L20 unknown mRNA	NA	coding protein	psRNATarget