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BaseInfo

ncRNA ID novel_gma_miR4037
Species Glycine max
Class miRNA
Genome position Chr16:14819895-14819963 [+]
Reference genome Glycine_max_v2.0
Source SRR1753104;SRR1753107;SRR1292929
Length 24
Mature sequence(if miRNA) 1 - AUCAAGUUGAUCCGUAUGAGUCAU - 24
Stem-loop(if miRNA) --            C      G          CA
  AUCAAGUUGAUC GUAUGA UCAUACAGAU  A
  |||||||||||| |||||| ||||||||||  C
  UAGUUCAACUAG CAUACU AGUAUGUCUA  A
CC            A      G          CU
Stem-loop sequence AUCAAGUUGAUCCGUAUGAGUCAUACAGAUCAACAUCAUCUGUAUGAGUCAUACAGAUCAACUUGAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  *|||**||||||||||||||||||
targets:406   UUGAAGCAUACGGAUCAACUUGAU   429

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  *|||**||||||||||||||||||
targets:1001   UUGAAGCAUACGGAUCAACUUGAU   1024

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006584073.2
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=||*||*|||||||||||||
targets:903   CUGAAACUUCUUAAGGAUCAACUUGAU   929

2.0 PREDICTED: Glycine max mitotic spindle checkpoint protein MAD1-like (LOC100808312), transcript variant X4, mRNA mitotic spindle checkpoint protein MAD1-like(LOC100808312) coding protein psRNATarget
XM_006584072.2
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=||*||*|||||||||||||
targets:926   CUGAAACUUCUUAAGGAUCAACUUGAU   952

2.0 PREDICTED: Glycine max mitotic spindle checkpoint protein MAD1-like (LOC100808312), transcript variant X3, mRNA mitotic spindle checkpoint protein MAD1-like(LOC100808312) coding protein psRNATarget
XM_006584071.1
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=||*||*|||||||||||||
targets:959   CUGAAACUUCUUAAGGAUCAACUUGAU   985

2.0 PREDICTED: Glycine max mitotic spindle checkpoint protein MAD1-like (LOC100808312), transcript variant X1, mRNA mitotic spindle checkpoint protein MAD1-like(LOC100808312) coding protein psRNATarget
XM_003529649.3
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=||*||*|||||||||||||
targets:938   CUGAAACUUCUUAAGGAUCAACUUGAU   964

2.0 PREDICTED: Glycine max mitotic spindle checkpoint protein MAD1-like (LOC100808312), transcript variant X2, mRNA mitotic spindle checkpoint protein MAD1-like(LOC100808312) coding protein psRNATarget
FJ014867.1
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=|||*|||||||||||||=|
targets:559   UUGAAUCUUCAAACGGAUCAACUUGGU   585

2.5 Glycine max clone cw6 TIR-NBS-LRR type disease resistance protein mRNA, complete cds NA coding protein psRNATarget
BT092325.1
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=|||*|||||||||||||=|
targets:662   UUGAAUCUUCAAACGGAUCAACUUGGU   688

2.5 Soybean clone JCVI-FLGm-15F18 unknown mRNA NA coding protein psRNATarget
NM_001249699.2
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=|||*|||||||||||||=|
targets:662   UUGAAUCUUCAAACGGAUCAACUUGGU   688

2.5 Glycine max TIR-NBS-LRR type disease resistance-like protein (LOC100527480), mRNA uncharacterized LOC100527480(LOC100527480) coding protein psRNATarget
XM_006576137.2
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=|||*|||||||||||||=|
targets:2892   UUGAAUCUUCAAACGGAUCAACUUGGU   2918

2.5 PREDICTED: Glycine max uncharacterized LOC100527480 (LOC100527480), transcript variant X2, mRNA uncharacterized LOC100527480(LOC100527480) coding protein psRNATarget
XM_006576135.2
ncRNA:24   UACU---GAGUAUGCCUAGUUGAACUA   1
  *|||---=|||*|||||||||||||=|
targets:3644   UUGAAUCUUCAAACGGAUCAACUUGGU   3670

2.5 PREDICTED: Glycine max uncharacterized LOC100527480 (LOC100527480), transcript variant X1, mRNA uncharacterized LOC100527480(LOC100527480) coding protein psRNATarget
XM_014769738.1
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  =||-=||||*||||||=|||||||
targets:1164   GUG-UUCAUCCGGAUCGACUUGAU   1186

2.5 PREDICTED: Glycine max vacuolar protein sorting-associated protein 35B-like (LOC100775573), transcript variant X2, mRNA vacuolar protein sorting-associated protein 35B-like(LOC100775573) coding protein psRNATarget
XM_003550382.3
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  =||-=||||*||||||=|||||||
targets:1163   GUG-UUCAUCCGGAUCGACUUGAU   1185

2.5 PREDICTED: Glycine max vacuolar protein sorting-associated protein 35B-like (LOC100775573), transcript variant X1, mRNA vacuolar protein sorting-associated protein 35B-like(LOC100775573) coding protein psRNATarget
XM_006573467.2
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  =|*|*|||||=||||||||||*||
targets:281   GUAAAUCAUAUGGAUCAACUUAAU   304

2.5 PREDICTED: Glycine max uncharacterized LOC102666981 (LOC102666981), mRNA uncharacterized LOC102666981(LOC102666981) coding protein psRNATarget
XM_006600975.2
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  |*|==|*|||||||||||*|||||
targets:1180   AAGGUUGAUACGGAUCAAGUUGAU   1203

2.5 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_006593444.2
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  ||*|**||||||||||||*|||||
targets:3669   AUAAAGCAUACGGAUCAAGUUGAU   3692

2.5 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget
XM_014770919.1
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  |*|*=||*|==|||||||||||||
targets:2148   AAGUUUCUUGUGGAUCAACUUGAU   2171

3.0 PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X3, mRNA uncharacterized LOC100800748(LOC100800748) coding protein psRNATarget
XM_006602969.2
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  |*|*=||*|==|||||||||||||
targets:2147   AAGUUUCUUGUGGAUCAACUUGAU   2170

3.0 PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X2, mRNA uncharacterized LOC100800748(LOC100800748) coding protein psRNATarget
XM_014770918.1
ncRNA:24   UACUGAGUAUGCCUAGUUGAACUA   1
  |*|*=||*|==|||||||||||||
targets:2147   AAGUUUCUUGUGGAUCAACUUGAU   2170

3.0 PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X1, mRNA uncharacterized LOC100800748(LOC100800748) coding protein psRNATarget
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