Search result

BaseInfo

ncRNA ID novel_gma_miR4008
Species Glycine max
Class miRNA
Genome position Chr13:15588800-15588900 [-]
Reference genome Glycine_max_v2.0
Source SRR1451680;SRR1451681
Length 20
Mature sequence(if miRNA) 1 - AUUUGGAUGCGAAAAAAGGA - 20
Stem-loop(if miRNA) --         G  -A     GAAA    AUUUAUUC     UU     AGU
  UUUUUUUUG AU  AAAUU    AACA        UUUUC  UUGAU   U
  ||||||||| ||  |||||    ||||        |||||  |||||
  GAAAAAAGC UA  UUUAA    UUGU        AAAAG  AACUA   U
AG         G  GG     -AAA    AUUUAAAA     -U     AAC
Stem-loop sequence UUUUUUUUGGAUAAAAUUGAAAAACAAUUUAUUCUUUUCUUUUGAUAGUUUCAAAUCAAUGAAAAAAAAUUUAUGUUAAAAAUUUGGAUGCGAAAAAAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003556600.3
ncRNA:20   AGGAAAAAAGCGUAGGUUUA   1
  ||||||||||*||||||||*
targets:192   UCCUUUUUUCCCAUCCAAAC   211

2.5 PREDICTED: Glycine max proline-rich antigen homolog (LOC100820386), mRNA proline-rich antigen homolog(LOC100820386) coding protein psRNATarget