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BaseInfo

ncRNA ID	novel_gma_miR3999
Species	Glycine max
Class	miRNA
Genome position	Chr1:53209285-53209419 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451680
Length	20
Mature sequence(if miRNA)	1 - AUUCAAUAAGAAAGUGACAC - 20
Stem-loop(if miRNA)	--                       C U             UUU    GGUCAA   AAACAACAAUGU   GUCACUUUUUUAUUGAAUGAUGA U UCACGUGUCAUGU   GAUG      UGA            A   ||||||||||||||||||||||| | |||||||||||||   ||||      |||   CAGUGAAAGAAUAACUUACUACU A AGUGCAUAGUACA   CUAC      AGG            U CA                       A C             --C    -AAUUA   UAUUUUCUACUU
Stem-loop sequence	GUCACUUUUUUAUUGAAUGAUGACUUUCACGUGUCAUGUUUUGAUGGGUCAAUGAAAACAACAAUGUAUUUCAUCUUUUAUGGAAUUAACAUCCACAUGAUACGUGACAAUCAUCAUUCAAUAAGAAAGUGACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410475.1	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   ||||||||||=||||||||| targets:82   GUGUCACUUUUUUAUUGAAU   101 Target Full Sequence	1.5	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   ||||||||||=||||||||| targets:82   GUGUCACUUUUUUAUUGAAU   101 Target Full Sequence	1.5	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
JB170936.1	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   ||||||||||=||||||||| targets:82   GUGUCACUUUUUUAUUGAAU   101 Target Full Sequence	1.5	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   ||||||||||=||||||||| targets:1491   GUGUCACUUUUUUAUUGAAU   1510 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   ||||||||||=||||||||| targets:1503   GUGUCACUUUUUUAUUGAAU   1522 Target Full Sequence	1.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006592085.2	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   *||*|||||||||||*|||| targets:1505   UUGACACUUUCUUAUGGAAU   1524 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100779750 (LOC100779750), mRNA	uncharacterized LOC100779750(LOC100779750)	coding protein	psRNATarget
XM_003527373.3	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   *|*||=|||||||||||||* targets:347   UUCUCGCUUUCUUAUUGAAA   366 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100800848 (LOC100800848), transcript variant X1, mRNA	uncharacterized LOC100800848(LOC100800848)	coding protein	psRNATarget
XM_003526205.3	ncRNA:20   CACAGUGAAAGAAUAACUUA   1   ||||*|*||||||||||||* targets:322   GUGUGAGUUUCUUAUUGAAA   341 Target Full Sequence	3.0	PREDICTED: Glycine max zinc finger protein NUTCRACKER-like (LOC100790620), mRNA	zinc finger protein NUTCRACKER-like(LOC100790620)	coding protein	psRNATarget