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BaseInfo

ncRNA ID novel_gma_miR3998
Species Glycine max
Class miRNA
Genome position Chr4:48723365-48723416 [-]
Reference genome Glycine_max_v2.0
Source SRR1451680
Length 20
Mature sequence(if miRNA) 1 - CUCUUGUUCGUUCGGGGCAA - 20
Stem-loop(if miRNA) --         --   UA  UG   GA
  GCUUUGGAU  GCA  AG  GUU  A
  |||||||||  |||  ||  |||
  CGGGGCUUG  UGU  UC  CGA  G
AA         CU   UC  GU   GG
Stem-loop sequence GCUUUGGAUGCAUAAGUGGUUGAAGGGAGCUGCUCUUGUUCGUUCGGGGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014766433.1
ncRNA:20   AACGGGGCUUGCUUGUUCUC   1
  **||=|*|||||||||||||
targets:378   ACGCUCGGAACGAACAAGAG   397

3.0 PREDICTED: Glycine max glycerol-3-phosphate acyltransferase, chloroplastic-like (LOC100789434), transcript variant X1, mRNA glycerol-3-phosphate acyltransferase, chloroplastic-like(LOC100789434) coding protein psRNATarget
XM_003516910.3
ncRNA:20   AACGGGGCUUGCUUGUUCUC   1
  **||=|*|||||||||||||
targets:296   ACGCUCGGAACGAACAAGAG   315

3.0 PREDICTED: Glycine max glycerol-3-phosphate acyltransferase, chloroplastic-like (LOC100789434), transcript variant X2, mRNA glycerol-3-phosphate acyltransferase, chloroplastic-like(LOC100789434) coding protein psRNATarget