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BaseInfo

ncRNA ID novel_gma_miR3979
Species Glycine max
Class miRNA
Genome position Chr13:29160456-29160545 [+]
Reference genome Glycine_max_v2.0
Source SRR1451679
Length 19
Mature sequence(if miRNA) 72 - UAAUUGGCUUUGUGGUUCU - 90
Stem-loop(if miRNA) -UAUUAU GG   UG    AU   U   UG   UG G GAUUAA
       U  GGU  AUUA  UAU ACU  AAU  G U      U
       |  |||  ||||  ||| |||  |||  | |      G
       G  UCG  UAAU  GUA UGG  UUG  U G      U
UCUUGGU UU   GU    GU   U   GU   GU G GGUGUA
Stem-loop sequence UAUUAUUGGGGUUGAUUAAUUAUUACUUGAAUUGGGUGAUUAAUGUAUGUGGGGUUGGUUUGGGUUAUGUGUAAUUGGCUUUGUGGUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003536809.3
ncRNA:19   UCUUGGUGUUUCGGUUAAU   1
  |*|=||||||||||||||=
targets:186   AUAGCCACAAAGCCAAUUG   204

3.0 PREDICTED: Glycine max polygalacturonase At1g48100-like (LOC100776338), mRNA polygalacturonase At1g48100-like(LOC100776338) coding protein psRNATarget