ncRNA ID | novel_gma_miR3979 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr13:29160456-29160545 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451679 |
Length | 19 |
Mature sequence(if miRNA) | 72 - UAAUUGGCUUUGUGGUUCU - 90 |
Stem-loop(if miRNA) |
-UAUUAU GG   UG    AU   U   UG   UG G GAUUAA        U  GGU  AUUA  UAU ACU  AAU  G U      U        |  |||  ||||  ||| |||  |||  | |      G        G  UCG  UAAU  GUA UGG  UUG  U G      U UCUUGGU UU   GU    GU   U   GU   GU G GGUGUA |
Stem-loop sequence | UAUUAUUGGGGUUGAUUAAUUAUUACUUGAAUUGGGUGAUUAAUGUAUGUGGGGUUGGUUUGGGUUAUGUGUAAUUGGCUUUGUGGUUCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003536809.3 |
|
3.0 | PREDICTED: Glycine max polygalacturonase At1g48100-like (LOC100776338), mRNA | polygalacturonase At1g48100-like(LOC100776338) | coding protein | psRNATarget |