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BaseInfo

ncRNA ID novel_gma_miR3964
Species Glycine max
Class miRNA
Genome position Chr20:29414134-29414240 [-]
Reference genome Glycine_max_v2.0
Source SRR1451678;SRR1451679;SRR1451681
Length 21
Mature sequence(if miRNA) 87 - CUUUCUCUCUCUAGGAUUCGA - 107
Stem-loop(if miRNA) --  U     C  -   GA    A AAUGG    -C   CCC     ----U   AAA
  CU UCUCU UC UAG  UUCG C     UGGC  GCU   UCGCC     CGC   G
  || ||||| || |||  |||| |     ||||  |||   |||||     |||   A
  GG AGAGA AG AUC  GAGC G     GCCG  CGA   AGCGG     GUG   G
GU  U     -  U   AC    A GACGA    CU   ---     UACAU   CAA
Stem-loop sequence CUUUCUCUCUCUAGGAUUCGACAAUGGUGGCCGCUCCCUCGCCUCGCAAAGAGAACGUGUACAUGGCGAAGCUCGCCGAGCAGGACGAGCACUAUGAAGAGAUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534506.3
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  |||=||=||||||||||||||
targets:267   UCGGAUUCUAGAGAGAGAAAG   287

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100805894), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100805894) coding protein psRNATarget
XM_003552354.3
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=||=||||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAAG   284

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X5, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_014770813.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=||=||||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAAG   284

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X4, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602745.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=||=||||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAAG   284

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X2, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602746.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=||=||||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAAG   284

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X3, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602744.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=||=||||||||||||||
targets:264   GCGGAUUCUAGAGAGAGAAAG   284

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602461.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:300   UCAAAUUCUAGAGAGAGAAAC   320

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X10, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770822.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:301   UCAAAUUCUAGAGAGAGAAAC   321

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X11, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602455.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X2, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770820.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X3, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602460.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:298   UCAAAUUCUAGAGAGAGAAAC   318

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X9, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602459.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X8, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602458.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:298   UCAAAUUCUAGAGAGAGAAAC   318

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X7, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602454.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X1, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_014770821.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X6, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602456.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X4, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
XM_006602457.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  ||*|||=|||||||||||||*
targets:299   UCAAAUUCUAGAGAGAGAAAC   319

3.0 PREDICTED: Glycine max chromatin modification-related protein EAF1 B-like (LOC100819248), transcript variant X5, mRNA chromatin modification-related protein EAF1 B-like(LOC100819248) coding protein psRNATarget
BT097202.1
ncRNA:21   AGCUUA-GGAUCUCUCUCUUUC   1
  *=||||-|=|||||||||||||
targets:78   CUGAAUGCUUAGAGAGAGAAAG   99

3.0 Soybean clone JCVI-FLGm-21P21 unknown mRNA NA coding protein psRNATarget
NM_001249764.1
ncRNA:21   AGCUUA-GGAUCUCUCUCUUUC   1
  *=||||-|=|||||||||||||
targets:406   CUGAAUGCUUAGAGAGAGAAAG   427

3.0 Glycine max auxin-induced protein AUX28 (AUX28), transcript variant 1, mRNA auxin-regulated protein (Aux28)(AUX28) coding protein psRNATarget
J03919.1
ncRNA:21   AGCUUA-GGAUCUCUCUCUUUC   1
  *=||||-|=|||||||||||||
targets:406   CUGAAUGCUUAGAGAGAGAAAG   427

3.0 Soybean auxin-regulated protein (Aux28) mRNA, complete cds NA coding protein psRNATarget
BT095308.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=*|=||||||||||||||
targets:201   ACGGUUUCUAGAGAGAGAAAG   221

3.0 Soybean clone JCVI-FLGm-25I9 unknown mRNA NA coding protein psRNATarget
AK243882.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=*|=||||||||||||||
targets:35   ACGGUUUCUAGAGAGAGAAAG   55

3.0 Glycine max cDNA, clone: GMFL01-01-I04 NA coding protein psRNATarget
NM_001250953.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=*|=||||||||||||||
targets:41   ACGGUUUCUAGAGAGAGAAAG   61

3.0 Glycine max mitogen-activated protein kinase 1 (MAPK1), mRNA mitogen-activated protein kinase 1(MAPK1) coding protein psRNATarget
AK244765.1
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=*|=||||||||||||||
targets:42   ACGGUUUCUAGAGAGAGAAAG   62

3.0 Glycine max cDNA, clone: GMFL01-13-H17 NA coding protein psRNATarget
XM_003539692.3
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *||=*|=||||||||||||||
targets:209   ACGGUUUCUAGAGAGAGAAAG   229

3.0 PREDICTED: Glycine max mitogen-activated protein kinase 3 (LOC100801339), mRNA mitogen-activated protein kinase 3(LOC100801339) coding protein psRNATarget
XM_006586675.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  |**|=|=||||||||||||||
targets:116   UAAAGUUCUAGAGAGAGAAAG   136

3.0 PREDICTED: Glycine max dynamin-2B-like (LOC100778966), transcript variant X2, mRNA dynamin-2B-like(LOC100778966) coding protein psRNATarget
XM_003534371.3
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  |**|=|=||||||||||||||
targets:115   UAAAGUUCUAGAGAGAGAAAG   135

3.0 PREDICTED: Glycine max dynamin-2B-like (LOC100778966), transcript variant X1, mRNA dynamin-2B-like(LOC100778966) coding protein psRNATarget
XM_006586025.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *|**||=||||||||||||||
targets:74   ACCUAUUCUAGAGAGAGAAAG   94

3.0 PREDICTED: Glycine max uncharacterized LOC100799986 (LOC100799986), transcript variant X2, mRNA uncharacterized LOC100799986(LOC100799986) coding protein psRNATarget
XM_006586024.2
ncRNA:21   AGCUUAGGAUCUCUCUCUUUC   1
  *|**||=||||||||||||||
targets:74   ACCUAUUCUAGAGAGAGAAAG   94

3.0 PREDICTED: Glycine max uncharacterized LOC100799986 (LOC100799986), transcript variant X1, mRNA uncharacterized LOC100799986(LOC100799986) coding protein psRNATarget
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