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BaseInfo

ncRNA ID novel_gma_miR3963
Species Glycine max
Class miRNA
Genome position Chr1:56209049-56209106 [+]
Reference genome Glycine_max_v2.0
Source SRR1451678
Length 20
Mature sequence(if miRNA) 1 - UUAAGUUGUUCUCUCGUGGA - 20
Stem-loop(if miRNA) --     UUG    C     GA     AUG
  UUAAG   UUCU UCGUG  UACUU   G
  |||||   |||| |||||  |||||
  AGUUU   AAGA AGCAC  AUGGA   A
GA     UUG    A     --     ACG
Stem-loop sequence UUAAGUUGUUCUCUCGUGGAUACUUAUGGAGCAAGGUACACGAAAGAAGUUUUUGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520801.3
ncRNA:20   AGGUGCUCUCUUGUUGAAUU   1
  |||*|||*||||||||||||
targets:487   UCCUCGAAAGAACAACUUAA   506

2.5 PREDICTED: Glycine max protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like (LOC100803965), mRNA protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like(LOC100803965) coding protein psRNATarget