| ncRNA ID | ath-miR403-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:19415052-19415186 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 103 - UUAGAUUCACGCACAAACUCG - 123 |
| Stem-loop(if miRNA) |
UUGUCAUUAGA U U AU U U -G UUUAUGUAAGAGAUUCU AGAG CG AUUAC GUUU GUGC UGAAUCUAAUUCAACA GC U |||| || ||||| |||| |||| |||||||||||||||| || UUUC GU UAAUG CAAA CACG ACUUAGAUUAGGUUGU UU U ----------- U C CU - C UG UCUAAUAUCCUUAACAA |
| Stem-loop sequence | UUGUCAUUAGAAGAGUCGUAUUACAUGUUUUGUGCUUGAAUCUAAUUCAACAGGCUUUAUGUAAGAGAUUCUUUAACAAUUCCUAUAAUCUUUGUUGUUGGAUUAGAUUCACGCACAAACUCGUAAUCUGUCUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_102866.3 |
|
0.0 | Arabidopsis thaliana Argonaute family protein (AGO2), mRNA | Argonaute family protein(AGO2) | coding protein | psRNATarget | |||||||||
| AK118463.1 |
|
0.0 | Arabidopsis thaliana At1g31280 mRNA for unknown protein, complete cds, clone: RAFL19-70-F03 | NA | coding protein | psRNATarget | |||||||||
| NM_001332952.1 |
|
2.0 | Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA | ARGONAUTE 3(AGO3) | coding protein | psRNATarget | |||||||||
| NM_102867.2 |
|
2.0 | Arabidopsis thaliana ARGONAUTE 3 (AGO3), partial mRNA | ARGONAUTE 3(AGO3) | coding protein | psRNATarget | |||||||||
| NM_001332953.1 |
|
2.0 | Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA | ARGONAUTE 3(AGO3) | coding protein | psRNATarget |
| 1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |
| 2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 3 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 4 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |