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BaseInfo

ncRNA ID	novel_gma_miR3953
Species	Glycine max
Class	miRNA
Genome position	Chr14:4910210-4910334 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451678;SRR1451679;SRR1451681
Length	20
Mature sequence(if miRNA)	106 - GUAAUCAAAAGUGAAAAAAA - 125
Stem-loop(if miRNA)	--           CA        A  G C    -AA       --C   -        CAAAAG   UUUUUCACUUU  AUUACAAA AU U UCCU   UUUUCAC   GUU CUUAUUUU      U   |||||||||||  |||||||| || | ||||   |||||||   ||| ||||||||      U   AAAAAGUGAAA  UAAUGUUU UA A AGGA   AAAGGUG   CAA GAAUAAAA      U AA           AC        A  G A    ACA       AAA   U        AACAUG
Stem-loop sequence	UUUUUCACUUUCAAUUACAAAAAUGUCUCCUAAUUUUCACCGUUCUUAUUUUCAAAAGUUUGUACAAAAAAUAAGUAACAAAGUGGAAAACAAGGAAAGAUAUUUGUAAUCAAAAGUGAAAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003545845.3	ncRNA:20   AAAAAAAGUGAAAACUAAUG   1   **|||||||||||||||||| targets:3854   AGUUUUUCACUUUUGAUUAC   3873 Target Full Sequence	1.0	PREDICTED: Glycine max RNA polymerase II C-terminal domain phosphatase-like 1 (LOC100816525), transcript variant X1, mRNA	RNA polymerase II C-terminal domain phosphatase-like 1(LOC100816525)	coding protein	psRNATarget
XM_006597357.2	ncRNA:20   AAAAAAAGUGAAAACUAAUG   1   **|||||||||||||||||| targets:3791   AGUUUUUCACUUUUGAUUAC   3810 Target Full Sequence	1.0	PREDICTED: Glycine max RNA polymerase II C-terminal domain phosphatase-like 1 (LOC100816525), transcript variant X2, mRNA	RNA polymerase II C-terminal domain phosphatase-like 1(LOC100816525)	coding protein	psRNATarget
XM_006597358.2	ncRNA:20   AAAAAAAGUGAAAACUAAUG   1   **|||||||||||||||||| targets:3776   AGUUUUUCACUUUUGAUUAC   3795 Target Full Sequence	1.0	PREDICTED: Glycine max RNA polymerase II C-terminal domain phosphatase-like 1 (LOC100816525), transcript variant X3, mRNA	RNA polymerase II C-terminal domain phosphatase-like 1(LOC100816525)	coding protein	psRNATarget
XM_006582761.2	ncRNA:20   AAAAAAAGUGAAAACUAAUG   1   *|||||||*||||||||||= targets:212   CUUUUUUCCCUUUUGAUUAU   231 Target Full Sequence	2.5	PREDICTED: Glycine max with no lysine kinase 6 (WNK6), transcript variant X1, mRNA	with no lysine kinase 6(WNK6)	coding protein	psRNATarget
XM_006582762.2	ncRNA:20   AAAAAAAGUGAAAACUAAUG   1   *|||||||*||||||||||= targets:212   CUUUUUUCCCUUUUGAUUAU   231 Target Full Sequence	2.5	PREDICTED: Glycine max with no lysine kinase 6 (WNK6), transcript variant X2, mRNA	with no lysine kinase 6(WNK6)	coding protein	psRNATarget