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BaseInfo

ncRNA ID	novel_gma_miR3942
Species	Glycine max
Class	miRNA
Genome position	Chr1:54355241-54355322 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451678
Length	20
Mature sequence(if miRNA)	63 - AGCAGAAGGAUCAACUGAGA - 82
Stem-loop(if miRNA)	--AG         - A      AUU  AAAAGGUGUGUGUUU     CAGAAGGAU C ACUGAG   CC               G     ||||||||| | ||||||   ||               U     GUUUUCUUA G UGACUC   UA               U AAUA         A A      --C  CUCAAAAAUGUUCCU
Stem-loop sequence	AGCAGAAGGAUCAACUGAGAUUCCAAAAGGUGUGUGUUUGUUUCCUUGUAAAAACUCAUCCUCAGUAGAAUUCUUUUGAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006589750.2	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   *|||||*||||||||=|||| targets:208   GCUCAGGUGAUCCUUUUGCU   227 Target Full Sequence	2.5	PREDICTED: Glycine max antifungal protein ginkbilobin-2-like (LOC102666546), mRNA	antifungal protein ginkbilobin-2-like(LOC102666546)	coding protein	psRNATarget
XM_006575805.2	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   *|||||*||||||||=|||| targets:210   CCUCAGGUGAUCCUUUUGCU   229 Target Full Sequence	2.5	PREDICTED: Glycine max antifungal protein ginkbilobin-2-like (LOC102662232), mRNA	antifungal protein ginkbilobin-2-like(LOC102662232)	coding protein	psRNATarget
XM_003540603.3	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   *=||||||||||||||||*| targets:999   CUUCAGUUGAUCCUUCUGGU   1018 Target Full Sequence	2.5	PREDICTED: Glycine max translocase of chloroplast 120, chloroplastic-like (LOC100810931), mRNA	translocase of chloroplast 120, chloroplastic-like(LOC100810931)	coding protein	psRNATarget
XM_006582960.2	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   ||||||*|||||||||*||| targets:618   UCUCAGAUGAUCCUUCAGCU   637 Target Full Sequence	2.5	PREDICTED: Glycine max inactive protein kinase SELMODRAFT_444075-like (LOC100816340), transcript variant X2, mRNA	inactive protein kinase SELMODRAFT_444075-like(LOC100816340)	coding protein	psRNATarget
XM_014777627.1	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   ||||||*|||||||||*||| targets:885   UCUCAGAUGAUCCUUCAGCU   904 Target Full Sequence	2.5	PREDICTED: Glycine max inactive protein kinase SELMODRAFT_444075-like (LOC100816340), transcript variant X1, mRNA	inactive protein kinase SELMODRAFT_444075-like(LOC100816340)	coding protein	psRNATarget
XM_006575639.2	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   |||=*|*||||||||||||| targets:170   UCUUUGCUGAUCCUUCUGCU   189 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1 (LOC100814628), transcript variant X1, mRNA	heterogeneous nuclear ribonucleoprotein 1(LOC100814628)	coding protein	psRNATarget
AK285173.1	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   |||=*|*||||||||||||| targets:707   UCUUUGCUGAUCCUUCUGCU   726 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-03-I12	NA	coding protein	psRNATarget
XM_003519566.3	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   |||=*|*||||||||||||| targets:703   UCUUUGCUGAUCCUUCUGCU   722 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1 (LOC100814628), transcript variant X2, mRNA	heterogeneous nuclear ribonucleoprotein 1(LOC100814628)	coding protein	psRNATarget
XM_003544667.3	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   |||=*|*||||||||||||| targets:768   UCUUUGCUGAUCCUUCUGCU   787 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1 (LOC100788515), transcript variant X1, mRNA	heterogeneous nuclear ribonucleoprotein 1(LOC100788515)	coding protein	psRNATarget
XM_006595641.2	ncRNA:20   AGAGUCAACUAGGAAGACGA   1   |||=*|*||||||||||||| targets:774   UCUUUGCUGAUCCUUCUGCU   793 Target Full Sequence	3.0	PREDICTED: Glycine max heterogeneous nuclear ribonucleoprotein 1 (LOC100788515), transcript variant X2, mRNA	heterogeneous nuclear ribonucleoprotein 1(LOC100788515)	coding protein	psRNATarget