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BaseInfo

ncRNA ID novel_gma_miR3939
Species Glycine max
Class miRNA
Genome position Chr7:6406474-6406560 [+]
Reference genome Glycine_max_v2.0
Source SRR1451677
Length 20
Mature sequence(if miRNA) 1 - AAUACUGGGGACUUGUAGGC - 20
Stem-loop(if miRNA) --           CUUG     UUUUUU      CAUAUU  GUA
  AAUACUGGGGA    UAGGC      UUAAAG      UG   G
  |||||||||||    |||||      ||||||      ||   C
  UUGUGACCUCU    GUCCG      AGUUUC      AC   A
AA           -UCA     --UACU      -UCUUU  AAU
Stem-loop sequence AAUACUGGGGACUUGUAGGCUUUUUUUUAAAGCAUAUUUGGUAGCAUAACAUUUCUCUUUGAUCAUGCCUGACUUCUCCAGUGUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534791.3
ncRNA:20   CGGAUGUUCAGGGGUCAUAA   1
  *||*|||||||||||||*||
targets:286   UCCAACAAGUCCCCAGUUUU   305

2.5 PREDICTED: Glycine max uncharacterized LOC100786266 (LOC100786266), mRNA uncharacterized LOC100786266(LOC100786266) coding protein psRNATarget
XM_003546317.3
ncRNA:20   CGGAUGUUCAGGGGUCAUAA   1
  *||*|||||||||||||*||
targets:383   UCCAACAAGUCCCCAGUUUU   402

2.5 PREDICTED: Glycine max uncharacterized LOC100777661 (LOC100777661), transcript variant X1, mRNA uncharacterized LOC100777661(LOC100777661) coding protein psRNATarget