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BaseInfo

ncRNA ID novel_gma_miR3934
Species Glycine max
Class miRNA
Genome position Chr2:45143445-45143521 [-]
Reference genome Glycine_max_v2.0
Source SRR1451677
Length 20
Mature sequence(if miRNA) 58 - CAUGAUGAUUGUGAUCACUG - 77
Stem-loop(if miRNA) --     U   UG -G       UU   -     CC  GU
  CAUGA GAU  U  AUCACUG  CUG UUUUU  AU  U
  ||||| |||  |  |||||||  ||| |||||  ||
  GUAUU CUA  G  UAGUGAU  GAC AGAAA  UA  C
GA     -   GU AG       CU   C     UU  AC
Stem-loop sequence CAUGAUGAUUGUGAUCACUGUUCUGUUUUUCCAUGUUCCAAUUUAAAGACCAGUCUAGUGAUGAGUGAUCUUAUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003544410.3
ncRNA:20   GUCACUAGUGUUAGUAGUAC   1
  *||||||||=||||||||||
targets:107   GAGUGAUCAUAAUCAUCAUG   126

1.5 PREDICTED: Glycine max nuclear pore complex protein NUP133-like (LOC100780148), mRNA nuclear pore complex protein NUP133-like(LOC100780148) coding protein psRNATarget
XM_003540696.3
ncRNA:20   GUCACUAGUGUUAGUAGUAC   1
  *|||||||||*||||||||*
targets:1146   AAGUGAUCACCAUCAUCAUU   1165

2.5 PREDICTED: Glycine max protein indeterminate-domain 9-like (LOC100781896), mRNA protein indeterminate-domain 9-like(LOC100781896) coding protein psRNATarget