Search result

BaseInfo

ncRNA ID	novel_gma_miR3931
Species	Glycine max
Class	miRNA
Genome position	Chr17:35480069-35480167 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1294486;SRR2045228;SRR1294487;SRR2045237;SRR2045377;SRR1292925;SRR1295520
Length	21
Mature sequence(if miRNA)	1 - UGUGGAAUCUUCAAUGGAGUC - 21
Stem-loop(if miRNA)	--      A     A         -       A           CAUUAG   UGUGGA UCUUC AUGGAGUCA AAGUCUA AUGUUGGUGGU      U   |||||| ||||| ||||||||| ||||||| |||||||||||   ACACUU AGAAG UACCUCAGU UUCAGGU UACAACCACCA      U UC      C     C         C       G           UUUGCU
Stem-loop sequence	UGUGGAAUCUUCAAUGGAGUCAAAGUCUAAAUGUUGGUGGUCAUUAGUUUCGUUUACCACCAACAUGUGGACUUCUGACUCCAUCGAAGACUUCACACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003533737.2	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||*||||||||||||||||| targets:14   AACCCCAUUGAAGAUUCCACA   34 Target Full Sequence	1.0	PREDICTED: Glycine max thiol protease aleurain-like (LOC547734), mRNA	thiol protease aleurain-like(LOC547734)	coding protein	psRNATarget
AK245442.1	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||*||||||||||||||||| targets:7   AACCCCAUUGAAGAUUCCACA   27 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-30-I21	NA	coding protein	psRNATarget
AK244916.1	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||*||||||||||||||=|| targets:9   AACCCCAUUGAAGAUUCCGCA   29 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-16-O02	NA	coding protein	psRNATarget
NM_001250891.2	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||*||||||||||||||=|| targets:8   AACCCCAUUGAAGAUUCCGCA   28 Target Full Sequence	2.5	Glycine max cysteine protease-like (LOC100170694), mRNA	cysteine protease-like(LOC100170694)	coding protein	psRNATarget
AK245366.1	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||*||||||||||||||=|| targets:9   AACCCCAUUGAAGAUUCCGCA   29 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-28-G17	NA	coding protein	psRNATarget
XM_003555466.3	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||||*||||||||*|||||| targets:230   CACUCAAUUGAAGACUCCACA   250 Target Full Sequence	2.5	PREDICTED: Glycine max kinesin-like protein KIF22 (LOC100779567), mRNA	kinesin-like protein KIF22(LOC100779567)	coding protein	psRNATarget
XM_003535381.3	ncRNA:21   CUGAGGUAACUUCUAAGGUGU   1   *||||*||||||||*|||||| targets:214   CACUCAAUUGAAGACUCCACA   234 Target Full Sequence	2.5	PREDICTED: Glycine max kinesin-like protein KIF22 (LOC100786278), mRNA	kinesin-like protein KIF22(LOC100786278)	coding protein	psRNATarget