Search result

BaseInfo

ncRNA ID novel_gma_miR3924
Species Glycine max
Class miRNA
Genome position Chr11:6734722-6734852 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 112 - AACGAAGUUUGAUUCAUUUU - 131
Stem-loop(if miRNA) --               UUCUA       AA     GU    UA   C  C    AG       AAA
  AAUGAAUCAAACUUU     CAAGUUA  AUCAA  UAUG  CUU AG UUUU  AAAAGUU   U
  |||||||||||||||     |||||||  |||||  ||||  ||| || ||||  |||||||   C
  UUACUUAGUUUGAAG     GUUCAGU  UAGUU  AUGU  GGA UC AAAA  UUUUCGA   G
UU               --CAA       --     GU    GC   A  U    AA       GAG
Stem-loop sequence AAUGAAUCAAACUUUUUCUACAAGUUAAAAUCAAGUUAUGUACUUCAGCUUUUAGAAAAGUUAAAUCGGAGAGCUUUUAAAAAAUCUAAGGCGUGUAUGUUGAUUGACUUGAACGAAGUUUGAUUCAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006582823.2
ncRNA:20   UUUUACUUAGUUUGAAGCAA   1
  |||||||||||||||||*||
targets:922   AAAAUGAAUCAAACUUCUUU   941

1.5 PREDICTED: Glycine max phosphopantothenoylcysteine decarboxylase-like (LOC100778368), transcript variant X2, mRNA phosphopantothenoylcysteine decarboxylase-like(LOC100778368) coding protein psRNATarget