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BaseInfo

ncRNA ID novel_gma_miR3912
Species Glycine max
Class miRNA
Genome position Chr5:33567308-33567366 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - UGCUCUCUCUUCAUUUUCUU - 20
Stem-loop(if miRNA) --     -     A    AA       -  U
  GAGAG GAGGA AGAG  AAGCUAC UG A
  ||||| ||||| ||||  ||||||| ||
  CUUUU CUUCU UCUC  UUUGAUG AC U
UU     A     C    -G       C  C
Stem-loop sequence GAGAGGAGGAAAGAGAAAAGCUACUGUAUCCACGUAGUUUGCUCUCUCUUCAUUUUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003545138.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  *=||*|||||||||||||||
targets:865   UGGAUAAUGAAGAGAGAGCA   884

2.0 PREDICTED: Glycine max uncharacterized LOC100790457 (LOC100790457), transcript variant X1, mRNA uncharacterized LOC100790457(LOC100790457) coding protein psRNATarget
XM_014767303.1
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  *=||*|||||||||||||||
targets:829   UGGAUAAUGAAGAGAGAGCA   848

2.0 PREDICTED: Glycine max uncharacterized LOC100790457 (LOC100790457), transcript variant X2, mRNA uncharacterized LOC100790457(LOC100790457) coding protein psRNATarget
XM_006597540.2
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  ||||=||||*||||||||||
targets:665   AAGAGAAUGCAGAGAGAGCA   684

2.5 PREDICTED: Glycine max uncharacterized LOC100810286 (LOC100810286), mRNA uncharacterized LOC100810286(LOC100810286) coding protein psRNATarget
XM_003526795.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  |||=|||*||||||||||||
targets:70   AAGGAAAGGAAGAGAGAGCA   89

2.5 PREDICTED: Glycine max protein LIKE COV 2 (LOC100801920), mRNA protein LIKE COV 2(LOC100801920) coding protein psRNATarget
BT094477.1
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  |||=|||*||||||||||||
targets:3   AAGGAAAGGAAGAGAGAGCA   22

2.5 Soybean clone JCVI-FLGm-14N23 unknown mRNA NA coding protein psRNATarget
XM_014770280.1
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:646   GAGGAAAUGAAGAGAAAGCA   665

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 6-like (LOC100819258), mRNA nucleobase-ascorbate transporter 6-like(LOC100819258) coding protein psRNATarget
XM_003519430.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:609   GAGGAAAUGAAGAGAAAGCA   628

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100786443), transcript variant X1, mRNA nucleobase-ascorbate transporter 7-like(LOC100786443) coding protein psRNATarget
XM_003531980.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:647   GAGGAAAUGAAGAGAAAGCA   666

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 6-like (LOC100776272), mRNA nucleobase-ascorbate transporter 6-like(LOC100776272) coding protein psRNATarget
XM_014764589.1
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:444   GAGGAAAUGAAGAGAAAGCA   463

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100786443), transcript variant X2, mRNA nucleobase-ascorbate transporter 7-like(LOC100786443) coding protein psRNATarget
XM_003517788.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:399   GAGGAAAUGAAGAGAAAGCA   418

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100814601), transcript variant X2, mRNA nucleobase-ascorbate transporter 7-like(LOC100814601) coding protein psRNATarget
XM_006573000.2
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:337   GAGGAAAUGAAGAGAAAGCA   356

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100814601), transcript variant X1, mRNA nucleobase-ascorbate transporter 7-like(LOC100814601) coding protein psRNATarget
XM_006574525.2
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:374   GAGGAAAUGAAGAGAAAGCA   393

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100786443), transcript variant X4, mRNA nucleobase-ascorbate transporter 7-like(LOC100786443) coding protein psRNATarget
XM_014764591.1
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:283   GAGGAAAUGAAGAGAAAGCA   302

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100786443), transcript variant X3, mRNA nucleobase-ascorbate transporter 7-like(LOC100786443) coding protein psRNATarget
XM_006573002.2
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =||=|||||||||||*||||
targets:225   GAGGAAAUGAAGAGAAAGCA   244

2.5 PREDICTED: Glycine max nucleobase-ascorbate transporter 7-like (LOC100814601), transcript variant X3, mRNA nucleobase-ascorbate transporter 7-like(LOC100814601) coding protein psRNATarget
XM_003537831.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =|||||=||*||||||||||
targets:36   GAGAAAGUGCAGAGAGAGCA   55

2.5 PREDICTED: Glycine max ras-related protein Rab7 (LOC100795309), transcript variant X1, mRNA ras-related protein Rab7(LOC100795309) coding protein psRNATarget
XM_006590835.2
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  =|||||=||*||||||||||
targets:37   GAGAAAGUGCAGAGAGAGCA   56

2.5 PREDICTED: Glycine max ras-related protein Rab7 (LOC100795309), transcript variant X2, mRNA ras-related protein Rab7(LOC100795309) coding protein psRNATarget
XM_003532908.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  *||||=|||||||||*||||
targets:2481   CAGAAGAUGAAGAGAAAGCA   2500

2.5 PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (LOC100776632), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase RLK1(LOC100776632) coding protein psRNATarget
XM_014778855.1
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  *=||||||||||||||||*|
targets:34   UGGAAAAUGAAGAGAGAGGA   53

2.5 PREDICTED: Glycine max F-box only protein 6-like (LOC100775721), transcript variant X1, mRNA F-box only protein 6-like(LOC100775721) coding protein psRNATarget
XM_003531151.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  *=||||||||||||||||*|
targets:34   UGGAAAAUGAAGAGAGAGGA   53

2.5 PREDICTED: Glycine max F-box only protein 6-like (LOC100775721), transcript variant X2, mRNA F-box only protein 6-like(LOC100775721) coding protein psRNATarget
XM_003555423.3
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  |*||||=||||||||||||*
targets:2095   ACGAAAGUGAAGAGAGAGCC   2114

3.0 PREDICTED: Glycine max cyclin-dependent kinase C-2-like (LOC100793565), transcript variant X1, mRNA cyclin-dependent kinase C-2-like(LOC100793565) coding protein psRNATarget
XM_006605558.2
ncRNA:20   UUCUUUUACUUCUCUCUCGU   1
  |*||||=||||||||||||*
targets:1894   ACGAAAGUGAAGAGAGAGCC   1913

3.0 PREDICTED: Glycine max cyclin-dependent kinase C-2-like (LOC100793565), transcript variant X2, mRNA cyclin-dependent kinase C-2-like(LOC100793565) coding protein psRNATarget
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