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BaseInfo

ncRNA ID novel_gma_miR3911
Species Glycine max
Class miRNA
Genome position Chr5:3113706-3113856 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 132 - ACAACUAUCUCCUUGUCAUU - 151
Stem-loop(if miRNA) --     -     AG    C C       -          ------  AACACUAUACACAGGUCAAGCUCAAGAAACGU
  UGGCG GGAGA  GGUU U ACCAAUG CGCAUUCGGU      AG                                G
  ||||| |||||  |||| | ||||||| ||||||||||      ||
  ACUGU CCUCU  UCAA A UGGUUAC GUGUAAGCCA      CC                                G
UU     U     -A    C A       A          AGGUUA  GCUCGUGUCACCGGUUCAUGAACCAUAGUCUC
Stem-loop sequence UGGCGGGAGAAGGGUUCUCACCAAUGCGCAUUCGGUAGAACACUAUACACAGGUCAAGCUCAAGAAACGUGGCUCUGAUACCAAGUACUUGGCCACUGUGCUCGCCAUUGGAACCGAAUGUGACAUUGGUAACAACUAUCUCCUUGUCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771575.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:343   GAUGAUCAGGAGAUAGUUGU   362

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC106797300), mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC106797300) coding protein psRNATarget
XM_003554985.3
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:759   GAUGAUCAGGAGAUAGUUGU   778

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100794274), mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100794274) coding protein psRNATarget
XM_006604989.2
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:771   GAUGAUCAGGAGAUAGUUGU   790

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100793213), mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100793213) coding protein psRNATarget
XM_014771505.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:744   GAUGAUCAGGAGAUAGUUGU   763

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100800259), transcript variant X2, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100800259) coding protein psRNATarget
XM_006603969.2
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:739   GAUGAUCAGGAGAUAGUUGU   758

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100800259), transcript variant X1, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100800259) coding protein psRNATarget
XM_006603964.2
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:730   GAUGAUCAGGAGAUAGUUGU   749

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100793753), transcript variant X2, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100793753) coding protein psRNATarget
XM_014773206.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:729   GAUGAUCAGGAGAUAGUUGU   748

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100793753), transcript variant X1, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100793753) coding protein psRNATarget
XM_014771483.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:750   GAUGAUCAGGAGAUAGUUGU   769

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100797106), transcript variant X2, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100797106) coding protein psRNATarget
XM_006603967.2
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:764   GAUGAUCAGGAGAUAGUUGU   783

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100795857), transcript variant X2, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100795857) coding protein psRNATarget
XM_014771482.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:750   GAUGAUCAGGAGAUAGUUGU   769

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100797106), transcript variant X1, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100797106) coding protein psRNATarget
XM_003554986.3
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =||||=*|||||||||||||
targets:763   GAUGAUCAGGAGAUAGUUGU   782

2.0 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4-like (LOC100795857), transcript variant X1, mRNA BTB/POZ and MATH domain-containing protein 4-like(LOC100795857) coding protein psRNATarget
XM_014778982.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =|*||||||||*||||||||
targets:3758   GAGGACAAGGAAAUAGUUGU   3777

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase makorin-like (LOC100819577), transcript variant X2, mRNA E3 ubiquitin-protein ligase makorin-like(LOC100819577) coding protein psRNATarget
XM_014778984.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =|*||||||||*||||||||
targets:4316   GAGGACAAGGAAAUAGUUGU   4335

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase makorin-like (LOC100819577), transcript variant X4, mRNA E3 ubiquitin-protein ligase makorin-like(LOC100819577) coding protein psRNATarget
XM_014778983.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =|*||||||||*||||||||
targets:4479   GAGGACAAGGAAAUAGUUGU   4498

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase makorin-like (LOC100819577), transcript variant X3, mRNA E3 ubiquitin-protein ligase makorin-like(LOC100819577) coding protein psRNATarget
XM_014778981.1
ncRNA:20   UUACUGUUCCUCUAUCAACA   1
  =|*||||||||*||||||||
targets:4518   GAGGACAAGGAAAUAGUUGU   4537

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase makorin-like (LOC100819577), transcript variant X1, mRNA E3 ubiquitin-protein ligase makorin-like(LOC100819577) coding protein psRNATarget
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