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BaseInfo

ncRNA ID	novel_gma_miR3899
Species	Glycine max
Class	miRNA
Genome position	Chr4:26327699-26327862 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	20
Mature sequence(if miRNA)	1 - AAGCUCAUUUUAUUUUUUUC - 20
Stem-loop(if miRNA)	--            AAA           A         GC         A      U     UGUCC      C UU    U   AAAAAAUGAAAU   CUUUUUCAUAA CUAAAAUUA  UCUCCAUUA CUAAUU GUAGA     UCUCAU U  CUUU A   ||||||||||||   ||||||||||| |||||||||  ||||||||| |||||| |||||     |||||| |  ||||   UUUUUUAUUUUA   GAAGAGGUAUU GAUUUUAAU  AGAGGUAAU GAUUAA CAUCU     AGAGUA A  GAAG G CU            CUC           C         GA         C      U     UGAAA      U UU    A
Stem-loop sequence	AAAAAAUGAAAUAAACUUUUUCAUAAACUAAAAUUAGCUCUCCAUUAACUAAUUUGUAGAUGUCCUCUCAUCUUUCUUUUAGAGAAGUUAUAUGAGAAAAGUUCUACUAAUUAGCUAAUGGAGAAGUAAUUUUAGCUUAUGGAGAAGCUCAUUUUAUUUUUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014775403.1	ncRNA:20   CUUUUUUUAUUUUACUCGAA   1   ||||||||||||||||*||| targets:439   GAAAAAAAUAAAAUGAACUU   458 Target Full Sequence	1.5	PREDICTED: Glycine max serine protease SPPA, chloroplastic-like (LOC100794820), transcript variant X3, mRNA	serine protease SPPA, chloroplastic-like(LOC100794820)	coding protein	psRNATarget
XM_014778359.1	ncRNA:20   CUUUUUUUAUUUUACUCGAA   1   ||==|||||||||||||||| targets:841   GAGGAAAAUAAAAUGAGCUU   860 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC106799520 (LOC106799520), mRNA	uncharacterized LOC106799520(LOC106799520)	coding protein	psRNATarget
XM_014769500.1	ncRNA:20   CUUUUUUUAUUUUACUCGAA   1   *=||||||||||||||*||| targets:649   AGAAAAAAUAAAAUGAACUU   668 Target Full Sequence	2.5	PREDICTED: Glycine max RHOMBOID-like protein 12, mitochondrial (LOC102659796), mRNA	RHOMBOID-like protein 12, mitochondrial(LOC102659796)	coding protein	psRNATarget
NM_001249881.2	ncRNA:20   CUUUUUUUAUUUUACUCGAA   1   *||==||||||||||||||* targets:627   AAAGGAAAUAAAAUGAGCUG   646 Target Full Sequence	3.0	Glycine max uncharacterized LOC100527748 (LOC100527748), mRNA	uncharacterized LOC100527748(LOC100527748)	coding protein	psRNATarget
BT092617.1	ncRNA:20   CUUUUUUUAUUUUACUCGAA   1   *||==||||||||||||||* targets:629   AAAGGAAAUAAAAUGAGCUG   648 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-11I24 unknown mRNA	NA	coding protein	psRNATarget
AK286708.1	ncRNA:20   CUUUUUUUAUUUUACUCGAA   1   *||==||||||||||||||* targets:625   AAAGGAAAUAAAAUGAGCUG   644 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-34-O21	NA	coding protein	psRNATarget