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BaseInfo

ncRNA ID novel_gma_miR3879
Species Glycine max
Class miRNA
Genome position Chr2:38370494-38370553 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 21
Mature sequence(if miRNA) 40 - UAUUUGUCGUCGGCGGUUUGC - 60
Stem-loop(if miRNA) ---AU              GCAAA  G   
     CCGCCGACGGCAAG     UG CGGU
     ||||||||||||||     || |||G
     GGCGGCUGCUGUUU     GC GCCA
CGUUU              AUGCG  G   
Stem-loop sequence AUCCGCCGACGGCAAGGCAAAUGGCGGUGACCGGCGGCGUAUUUGUCGUCGGCGGUUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006576992.2
ncRNA:21   CGUUUGGCGGCUGCUGUUUAU   1
  *|||||=*||||||||||||*
targets:339   CCAAACUCCCGACGACAAAUU   359

3.0 PREDICTED: Glycine max serine/threonine-protein kinase CTR1-like (LOC100787894), transcript variant X2, mRNA serine/threonine-protein kinase CTR1-like(LOC100787894) coding protein psRNATarget