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BaseInfo

ncRNA ID novel_gma_miR3869
Species Glycine max
Class miRNA
Genome position Chr2:28164951-28165041 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 21
Mature sequence(if miRNA) 1 - AGCCAAUCUUCAUCUUAUAAG - 21
Stem-loop(if miRNA) --C     U        GU       ---------   C      --AC  G
   AUGGG AUGAGGGU  GUUGAGA         UCU ACAUUG    UA A
   ||||| ||||||||  |||||||         ||| ||||||    ||
   UAUUC UACUUCUA  CGAUUCU         AGA UGUAAC    AU A
GAA     -        AC       AAAUAUUCC   -      CAGU  A
Stem-loop sequence CAUGGGUAUGAGGGUGUGUUGAGAUCUCACAUUGACUAGAAAUAUGACCAAUGUAGACCUUAUAAAUCUUAGCCAAUCUUCAUCUUAUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520950.3
ncRNA:21   GAAUAUUCUACUUCUAACCGA   1
  =*|||||||||||||*|||||
targets:1416   UAUAUAAGAUGAAGAGUGGCU   1436

1.5 PREDICTED: Glycine max uncharacterized LOC100799171 (LOC100799171), mRNA uncharacterized LOC100799171(LOC100799171) coding protein psRNATarget
XM_003541716.3
ncRNA:21   GAAUA-UUCUACUUCUAACCGA   1
  **|||-||||||||||||||||
targets:860   AGUAUGAAGAUGAAGAUUGGCU   881

2.0 PREDICTED: Glycine max transcription factor DYT1-like (LOC100806159), mRNA transcription factor DYT1-like(LOC100806159) coding protein psRNATarget
XM_006575206.2
ncRNA:21   GAAUAUUCUACUUCUAACCGA   1
  =**=*||||||||||||||||
targets:554   UGCGGAAGAUGAAGAUUGGCU   574

3.0 PREDICTED: Glycine max uncharacterized LOC102668122 (LOC102668122), mRNA uncharacterized LOC102668122(LOC102668122) coding protein psRNATarget
XM_006583826.2
ncRNA:21   GAAUAUUCUACUUCUAACCGA   1
  ||*||**||||||||||||||
targets:1056   CUGAUUCGAUGAAGAUUGGCU   1076

3.0 PREDICTED: Glycine max U-box domain-containing protein 26-like (LOC100778730), mRNA U-box domain-containing protein 26-like(LOC100778730) coding protein psRNATarget