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BaseInfo

ncRNA ID	novel_gma_miR3856
Species	Glycine max
Class	miRNA
Genome position	Chr20:37423658-37423876 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	19
Mature sequence(if miRNA)	1 - UUUAGAAGCACUUCUAAGA - 19
Stem-loop(if miRNA)	--UU           C  A     U                       U     C       U    CC  C       -----------       A CU       AUAA   CU     UAGAAGCACUU UA GAGAA AAAAUGAUGAGAUGAGUUUCUCC UAAGC AAAAUGA CUUU  AU AGCUAAU           UUGUAGA G  CUCUCAU    CUU  A     ||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||| ||||  || |||||||           ||||||| |  |||||||    |||     AUCUUCGUGAA AU CUCUU UUUUAUUACUCUACUCGAAGAGG AUUCG UUUUACU GAAA  UA UCGAUUG           AACAUCU C  GAGAGUA    GAA  U AGAU           A  C     C                       U     A       C    AC  A       GUAAUCAAUGA       A AG       ----   AA
Stem-loop sequence	UUUAGAAGCACUUCUAAGAGAAUAAAAUGAUGAGAUGAGUUUCUCCUUAAGCCAAAAUGAUCUUUCCAUCAGCUAAUUUGUAGAAGCUCUCUCAUAUAACUUCUAUAAAAGAUGAGAGGACAUCUACAAAGUAACUAAUGGUUAGCUAAUCAAAAGCUCAUUUUAGCUUAUGGAGAAGCUCAUCUCAUUAUUUUCUUCUCCUAAAAGUGCUUCUAUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006594197.2	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |=||||||||||||||||| targets:936   UUUUAGAAGUGCUUCUAAA   954 Target Full Sequence	1.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_003541440.3	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |=||||||||||||||||| targets:936   UUUUAGAAGUGCUUCUAAA   954 Target Full Sequence	1.0	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_014763080.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3722   UCUUAGAAGUGUUUCUAAA   3740 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763076.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3827   UCUUAGAAGUGUUUCUAAA   3845 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763077.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3958   UCUUAGAAGUGUUUCUAAA   3976 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763079.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:3970   UCUUAGAAGUGUUUCUAAA   3988 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763075.1	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||||||||||=||||||| targets:4059   UCUUAGAAGUGUUUCUAAA   4077 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_006587433.2	ncRNA:19   AGAAUCUUCACGAAGAUUU   1   |||*||||*|||||||||| targets:123   UCUGAGAACUGCUUCUAAA   141 Target Full Sequence	2.5	PREDICTED: Glycine max probable receptor-like protein kinase At1g67000 (LOC102665158), transcript variant X3, mRNA	probable receptor-like protein kinase At1g67000(LOC102665158)	coding protein	psRNATarget