Search result

BaseInfo

ncRNA ID	novel_gma_miR3852
Species	Glycine max
Class	miRNA
Genome position	Chr20:29585129-29585171 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451676
Length	21
Mature sequence(if miRNA)	23 - CAACGACACCUUCGUCACCUC - 43
Stem-loop(if miRNA)	--GA              GCA     UGACGAGGGUGUUG   G     ||||||||||||||   A     ACUGCUUCCACAGC   C CUCC              AAC
Stem-loop sequence	GAUGACGAGGGUGUUGGCAGACCAACGACACCUUCGUCACCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006574298.2	ncRNA:21   CUCCACUGCUUCCACAGCAAC   1   *=***|||||||||||||||| targets:506   CGCUCGACGAAGGUGUCGUUG   526 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100527081 (LOC100527081), transcript variant X2, mRNA	uncharacterized LOC100527081(LOC100527081)	coding protein	psRNATarget
XM_006574297.2	ncRNA:21   CUCCACUGCUUCCACAGCAAC   1   *=***|||||||||||||||| targets:506   CGCUCGACGAAGGUGUCGUUG   526 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100527081 (LOC100527081), transcript variant X1, mRNA	uncharacterized LOC100527081(LOC100527081)	coding protein	psRNATarget
BT091895.1	ncRNA:21   CUCCACUGCUUCCACAGCAAC   1   *=***|||||||||||||||| targets:344   CGCUCGACGAAGGUGUCGUUG   364 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-9G3 unknown mRNA	NA	coding protein	psRNATarget
NM_001251474.2	ncRNA:21   CUCCACUGCUUCCACAGCAAC   1   *=***|||||||||||||||| targets:342   CGCUCGACGAAGGUGUCGUUG   362 Target Full Sequence	3.0	Glycine max uncharacterized LOC100527081 (LOC100527081), mRNA	uncharacterized LOC100527081(LOC100527081)	coding protein	psRNATarget