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BaseInfo

ncRNA ID novel_gma_miR3850
Species Glycine max
Class miRNA
Genome position Chr20:23051085-23051151 [+]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - UUUAUUUUUAGGACAAAACU - 20
Stem-loop(if miRNA) --    U  UU       A   -UU     -  U
  UUUA UU  AGGACAA ACU   GGUGU UG U
  |||| ||  ||||||| |||   ||||| || U
  AGAU AA  UCUUGUU UGA   UCGUA AC C
UA    U  UU       A   UUU     U  G
Stem-loop sequence UUUAUUUUUAGGACAAAACUUUGGUGUUGUUUCGCAUAUGCUUUUAGUAUUGUUCUUUAAUUAGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK285756.1
ncRNA:20   UCAAAACAGGAUUUUUAUUU   1
  **||||||||||||||*|||
targets:1641   CCUUUUGUCCUAAAAAAAAA   1660

2.5 Glycine max cDNA, clone: GMFL01-15-M13 NA coding protein psRNATarget
XM_014778259.1
ncRNA:20   UCA-AAACAGGAUUUUUAUUU   1
  |||-|||*|||||||||||||
targets:12   AGUAUUUAUCCUAAAAAUAAA   32

3.0 PREDICTED: Glycine max probable beta-1,3-galactosyltransferase 2 (LOC100792032), transcript variant X1, mRNA probable beta-1,3-galactosyltransferase 2(LOC100792032) coding protein psRNATarget