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BaseInfo

ncRNA ID novel_gma_miR3840
Species Glycine max
Class miRNA
Genome position Chr11:22141169-22141367 [-]
Reference genome Glycine_max_v2.0
Source SRR1451676
Length 20
Mature sequence(if miRNA) 1 - AUUACAAGGACAAAAAAAAA - 20
Stem-loop(if miRNA) -UUA           AC     ---      A     CC     C     A                  C     AA           A       UAUC
    UUUUUGUUCUU  AAUUU   UUUUUU UUUUA  UCUUA AAAGU UGUUUGUUUUAUUUUUCG CCUUA  ACAUUUUAGAU AUGUUUU    A
    |||||||||||  |||||   |||||| |||||  ||||| ||||| |||||||||||||||||| |||||  ||||||||||| |||||||    C
    AAAAACAGGAA  UUAAA   AAAAAA AAAAU  GGAAU UUUUA AUAAACAAAAUAAAAAGU GGAAU  UGUGAAAUCUA UACGAAA    U
AAAA           CA     UUA      C     UA     C     C                  A     CC           C       CUUA
Stem-loop sequence UUAUUUUUGUUCUUACAAUUUUUUUUUAUUUUACCUCUUACAAAGUAUGUUUGUUUUAUUUUUCGCCCUUAAAACAUUUUAGAUAAUGUUUUUAUCACUAUUCAAAGCAUCAUCUAAAGUGUCCUAAGGAUGAAAAAUAAAACAAAUACAUUUUCUAAGGAUUAAAACAAAAAAAUUAAAUUACAAGGACAAAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT094624.1
ncRNA:20   AAAAAAAAACAGGAACAUUA   1
  |||||||||||||||*|||*
targets:9   UUUUUUUUUGUCCUUAUAAA   28

2.5 Soybean clone JCVI-FLGm-5H16 unknown mRNA NA coding protein psRNATarget