ncRNA ID | novel_gma_miR3840 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr11:22141169-22141367 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451676 |
Length | 20 |
Mature sequence(if miRNA) | 1 - AUUACAAGGACAAAAAAAAA - 20 |
Stem-loop(if miRNA) |
-UUA           AC     ---      A     CC     C     A                  C     AA           A       UAUC     UUUUUGUUCUU  AAUUU   UUUUUU UUUUA  UCUUA AAAGU UGUUUGUUUUAUUUUUCG CCUUA  ACAUUUUAGAU AUGUUUU    A     |||||||||||  |||||   |||||| |||||  ||||| ||||| |||||||||||||||||| |||||  ||||||||||| |||||||    C     AAAAACAGGAA  UUAAA   AAAAAA AAAAU  GGAAU UUUUA AUAAACAAAAUAAAAAGU GGAAU  UGUGAAAUCUA UACGAAA    U AAAA           CA     UUA      C     UA     C     C                  A     CC           C       CUUA |
Stem-loop sequence | UUAUUUUUGUUCUUACAAUUUUUUUUUAUUUUACCUCUUACAAAGUAUGUUUGUUUUAUUUUUCGCCCUUAAAACAUUUUAGAUAAUGUUUUUAUCACUAUUCAAAGCAUCAUCUAAAGUGUCCUAAGGAUGAAAAAUAAAACAAAUACAUUUUCUAAGGAUUAAAACAAAAAAAUUAAAUUACAAGGACAAAAAAAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT094624.1 |
|
2.5 | Soybean clone JCVI-FLGm-5H16 unknown mRNA | NA | coding protein | psRNATarget |